Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq133 214 2e-50 seq367 100 4e-16 >seq133 Length=726431 Score = 214 bits (236), Expect = 2e-50 Identities = 479/715 (67%), Gaps = 16/715 (2%) Strand=Plus/Plus Query 7031 TGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTA 7090 ||||| | || ||||| ||||| ||||| |||||||| || | || ||| || || Sbjct 640469 TGGACGGCGGCGCCGTAGGCGACGGCCTCGTCGGGGTTGATGCTCTTGCACAGCTCCTTG 640528 Query 7091 CCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACC 7150 ||||| ||| | ||| | || || | || ||||| || || || || |||||| Sbjct 640529 CCGTTGAAAAAGTCCTGGAGCAGGGTCTGGACCTTGGGGATACGGGTGGAGCCGCCGACC 640588 Query 7151 AAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACA 7210 | || | || | | | || || ||||| | ||| || | || || || Sbjct 640589 AGCACCACCTCGTGGATCTGGCCCTTGTCCATCTTGGCGTCGCGGATGACCTTCTCCACC 640648 Query 7211 GGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATG 7270 || ||||| || || ||||||| |||||| ||| ||||| || || || ||||| ||| Sbjct 640649 GGGTCCATGCACTTGCGGAACAGGTCCATGTTCAGCTCCTCGAAGCGGGCGCGGGTGATG 640708 Query 7271 GATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTC 7330 | | ||||| || | ||| ||||| | || || || || |||| | || | | Sbjct 640709 GCGGAGTAGAAGTCGATGCCCTCGTACAGGGAGTCGATCTCGATGGAGGCCTGGGTGGAG 640768 Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390 || || | | ||||| |||||||| || || || || | || || || || |||||| Sbjct 640769 GAGGAGAGCTGGCGCTTGGCGCGCTCGCAGGCAGTGCGCAGGCGGCGCAGCGCGCGCGGG 640828 Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTT---CAGAGAAG-TGTCGAAG 7446 || ||| || || ||||| | || || || ||||| | | ||||| || | | | Sbjct 640829 TTGCCGCTGATGTCCTTCTTGTTCTTGCGCTTGAACTCCTGGACGAAGAAGCTGACCAGG 640888 Query 7447 GAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTC 7506 || || || || || || |||| ||| || || |||||||| || || || || Sbjct 640889 CGGTTG----TCAAAGTCCTCGCCGCCCAGGTGGGTGTCGCCCGCGGTGGCCTTCACCTC 640944 Query 7507 AAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA 7566 ||||| || | || || | | || || |||||||| || || || ||||||||||| Sbjct 640945 GAAGATGCCCTCCTCGATCGTCAGCAGGGACACATCAAAGGTGCCGCCGCCCAGGTCAAA 641004 Query 7567 AATGAGTACGTTCGTATCGTC------GTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 ||||| |||||| ||| | | | | ||||| || || ||||||||||| || Sbjct 641005 GATGAGCACGTTCTGCTCGCCGGTGGTGGCGTGCTTCTTGTCCAGGCCGTACGCGATGGC 641064 Query 7621 CGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCAT 7679 || || || || || || || ||||| | ||| || |||||| ||||| | || | Sbjct 641065 GGCGGCGGTGGGCTCGTTGATGATACGCATGAC-GTCCAGGCCCGCAATCACGCCGGCGT 641123 Query 7680 CTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734 | || ||||| || || || || ||||| |||||||| || || || || ||||| Sbjct 641124 CCTTGGTCGCCTGGCGCTGGGAGTCGTTGAAGTAGGCGGGCACGGTGACCACCGC 641178 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/227 (69%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 7850 ATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCT 7909 |||||||| || || ||||||| | | ||||| | | ||| | || |||| Sbjct 641516 ATCATGGGCTTCTCGCCAGCACCAGACACGACCTTGAAGGGCCAGTGGGAGATGTCGTGC 641575 Query 7910 TGGACCTGTTG--GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGT 7967 |||| ||||| ||| ||||| | ||||| || ||||| ||||| || || |||| Sbjct 641576 TGGA--TGTTGCCGTCGTTGAACTTGCGGCCGATCAGGCGCTTGGCATCGAACACAGTGT 641633 Query 7968 TTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTT 8027 | ||||||||||||| |||||||| || || || ||||| || || || | | Sbjct 641634 TGATGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCGCCGATCAGGCGCTC---CGTGT 641690 Query 8028 CCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTC 8074 | || || || |||||||| || || || || || || || |||||| Sbjct 641691 CGGTGAAGGCCACGTACGAGGGCGTGGTACGGTTACCCTGCTCGTTC 641737 >seq367 Length=150649 Score = 100 bits (110), Expect = 4e-16 Identities = 229/341 (67%), Gaps = 9/341 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG-ACTTCAAAGATACC 7515 || || || || || |||| ||| || || |||| || ||| | || ||||| | || Sbjct 137616 TCAAAGTCCTCGCCGCCCAGGTGGGTGTCGCCCGATGT-GCTCAGCACCTCAAACACGCC 137558 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || ||| | | | || || ||||| || || || |||||||| || | || | Sbjct 137557 GCCGTCGATGGTCAGGATGGACACGTCAAAGGTGCCGCCGCCCAGGTCGAACACCAGGAT 137498 Query 7576 GTTCGTATCGTCGTCTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 |||| || ||| | ||||| || || ||||||||||| || || || || ||| Sbjct 137497 GTTCTGCTC-----CTTGGACTTCTTGTCCAGCCCGTACGCGATGGCAGCGGCGGTGGGT 137443 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || || || | |||| || || || ||||||| || |||||||| Sbjct 137442 TCGTTGATGATGCGCTCCACGGTCAGCCCCGCGATCACGCCCGCATCCTTGGTCGCTTGG 137383 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || |||| |||||| |||||||| ||||| || || || ||| | ||| | || Sbjct 137382 CGCTGCGCATCGTTGAAGTAGGCGGGGACGGTGACCACGGCGCGGGAGACGGGCCGGCCC 137323 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 || ||| ||||| | || ||||| ||||| || | ||| Sbjct 137322 AGGTACCCCTCCGCCGTCTCCTTCATCTTGGTCAGGATCAT 137282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129830754160