Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq99 123 3e-23
seq90 116 5e-21
seq43 87.8 2e-12
>seq99
Length=333813
Score = 123 bits (136), Expect = 3e-23
Identities = 122/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233
|| || ||||| || |||| ||||| || || ||||| || |||||||| || ||||||
Sbjct 93245 TTCGCCGAGCGCCTGGTCGCCTTTGCCTGCGTGGAGGGCATATTCTTCTCCGGCTCCTTC 93304
Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293
||| | || || ||| | |||||||| || |||||||| || || |||||||||||||
Sbjct 93305 TGCTCCATCTACTGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACCTTCTCCAACGAG 93364
Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|| ||||| || || ||||| || ||| || |||||
Sbjct 93365 CTCATCTCCCGCGATGAGGGCCTGCACACCGACTTTGC 93402
>seq90
Length=671320
Score = 116 bits (128), Expect = 5e-21
Identities = 121/159 (76%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232
||| || |||| || | || ||||| || || ||||| ||| ||||||| || |||||
Sbjct 288342 CTTCGCGCAGCGGCTGGTGGCCTTTGCCTGCGTGGAGGGCATCCTCTTCTCCGGCTCCTT 288401
Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292
|| || || || |||||||||||||| |||||||| || ||| |||||| |||||
Sbjct 288402 TTGTGCCATCTACTGGCTCAAGAAGCGGCACCTCATGCCCGGCCTCACCTTCTCAAACGA 288461
Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||| ||||| ||||| ||||| || ||| || |||||
Sbjct 288462 GCTCATCTCCCGTGATGAGGGCCTGCACACCGACTTTGC 288500
>seq43
Length=247289
Score = 87.8 bits (96), Expect = 2e-12
Identities = 124/169 (73%), Gaps = 4/169 (2%)
Strand=Plus/Minus
Query 112059 AACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGA 112117
||||| || | ||||||||||| ||| ||||| ||||||| ||| |||||||| || ||
Sbjct 177278 AACCACGGCAAGGAGGAGGCGCG-TGCGCGCGACCTCTTCTACGCGCTCTGGATCCCCGA 177220
Query 112118 TCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGC 112177
|||||||||||| | || |||| | || | ||||| ||||| || || || ||||
Sbjct 177219 CCTCTTCATGAAGCGCGTCGAGGCCAATGAGACCTGGTCCCTCTTCTGCCCCAACGAGGC 177160
Query 112178 ACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACAC 112225
|| || | | || ||| | ||| ||||| || ||||| |||||
Sbjct 177159 CCCGGGCATGGCAGACTGCTG-GGGCCCCGAGTTCGAGGCCCTGTACAC 177112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620739498029280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |