Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq99 91.5 2e-13 seq90 91.5 2e-13 >seq99 Length=333813 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || ||||| || ||||||||||| || |||| || || Sbjct 93403 GGCAAAGTCGGTGTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCC 93344 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| | ||| |||||| || || || || ||||| || Sbjct 93343 CGGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAATAT 93284 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACC 119673 ||||||||| ||||| || |||| || ||||| || || | || || | || || Sbjct 93283 GCCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGCGAATCGCTCTGCGCTCG-AGATCC 93225 Query 119674 ACTTGAGAGCCCAGTTGGCCTT 119695 |||| || ||||||| |||||| Sbjct 93224 ACTTCAGCGCCCAGTCGGCCTT 93203 >seq90 Length=671320 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || ||||| || ||||||||||| || |||| || || Sbjct 288501 GGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTGAGGCC 288442 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| | ||||| ||||| ||||||||||||| || || |||| ||| Sbjct 288441 GGGCATGAGGTGCCGCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGAAGAGGAT 288382 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGAC-TTGTCGAACC 119673 ||||||||| ||||| || || | || |||| || ||| | || | || ||| || Sbjct 288381 GCCCTCCACGCAGGCAAAGGCCACCAGCCGCTGCGC-GAAGCTGGACCCGCTGCCGATCC 288323 Query 119674 ACTTGAGAGCCCAGTTGGCCTT 119695 || |||| ||||| | ||||| Sbjct 288322 ACCTGAGGGCCCACTCCGCCTT 288301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973246537200