Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq99 91.5 2e-13
seq90 91.5 2e-13
>seq99
Length=333813
Score = 91.5 bits (100), Expect = 2e-13
Identities = 143/202 (71%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || || || || ||||| || ||||||||||| || |||| || ||
Sbjct 93403 GGCAAAGTCGGTGTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCC 93344
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
|||||||| || | ||||| | ||| |||||| || || || || ||||| ||
Sbjct 93343 CGGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAATAT 93284
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACC 119673
||||||||| ||||| || |||| || ||||| || || | || || | || ||
Sbjct 93283 GCCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGCGAATCGCTCTGCGCTCG-AGATCC 93225
Query 119674 ACTTGAGAGCCCAGTTGGCCTT 119695
|||| || ||||||| ||||||
Sbjct 93224 ACTTCAGCGCCCAGTCGGCCTT 93203
>seq90
Length=671320
Score = 91.5 bits (100), Expect = 2e-13
Identities = 143/202 (71%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || || || || ||||| || ||||||||||| || |||| || ||
Sbjct 288501 GGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTGAGGCC 288442
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
|||||||| | ||||| ||||| ||||||||||||| || || |||| |||
Sbjct 288441 GGGCATGAGGTGCCGCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGAAGAGGAT 288382
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGAC-TTGTCGAACC 119673
||||||||| ||||| || || | || |||| || ||| | || | || ||| ||
Sbjct 288381 GCCCTCCACGCAGGCAAAGGCCACCAGCCGCTGCGC-GAAGCTGGACCCGCTGCCGATCC 288323
Query 119674 ACTTGAGAGCCCAGTTGGCCTT 119695
|| |||| ||||| | |||||
Sbjct 288322 ACCTGAGGGCCCACTCCGCCTT 288301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588973246537200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |