Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_015279.1
Length=190789
Score E
Sequences producing significant alignments: (Bits) Value
seq243 684 0.0
seq260 536 1e-147
>seq243
Length=18593
Score = 684 bits (758), Expect = 0.0
Identities = 745/986 (76%), Gaps = 2/986 (0%)
Strand=Plus/Minus
Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807
|| || ||||||||||| || | |||||| | ||||| |||||||| || |||||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTC-ATCGTCGCCTTCATCGCTGCTCC 179866
||||| || || | || ||||||||| ||| || || |||| || |||||||||||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728
Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926
|| || || || ||||| || || ||||| || | |||||| | | ||||| || ||
Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668
Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986
||| || ||||| || || || || |||| |||||||||||| | || || || || ||
Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608
Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046
||||||||| || || |||||||| ||| | ||||| ||||| |||| ||||||| ||||
Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548
Query 180047 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCG 180106
| ||||| | | || || | | | |||||||||||||| |||||| | |||| ||
Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488
Query 180107 CTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 180166
|| |||||||| || |||||| || || ||||| || || || |||||||| ||||
Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428
Query 180167 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCAT 180226
||||||| | | ||||| | || ||||||||||||||||| | ||||| | || ||
Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368
Query 180227 TTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCC 180286
|||||| || ||||| | ||| | || ||||||||||| || ||||| | ||||||||
Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308
Query 180287 CTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGG 180346
||||| ||||| || || || ||||| || || |||||| | || || |||||||| ||
Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248
Query 180347 TTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGG 180406
|||| | || || ||||| | |||||||||| ||||||| || || ||| ||
Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188
Query 180407 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGG 180466
|||||| || || ||| ||||||| || ||||||||||| ||||| |||||||| |||||
Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128
Query 180467 TCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGC 180526
|||| | || ||||| || ||||| || || ||||| ||||| | ||||||||| | ||
Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068
Query 180527 AGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 180586
|| ||||| || ||||| || ||||| ||||| | || | || |||||||| ||
Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008
Query 180587 CCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACAC 180646
| | || ||||||||||| ||||| || | ||||| ||||||||||| | |||||
Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948
Query 180647 TTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGC 180706
|||||| || | | ||||| ||| ||| ||||||||||||||||| || ||||||||
Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888
Query 180707 TCACAACTTCCCACTTGACCTGGCAG 180732
||||| |||||||| || | ||||
Sbjct 2887 ACACAATTTCCCACTAGATTTAGCAG 2862
>seq260
Length=66046
Score = 536 bits (594), Expect = 1e-147
Identities = 733/1018 (72%), Gaps = 4/1018 (0%)
Strand=Plus/Minus
Query 181421 TGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 181480
|||||||| ||| |||||||||||||| || || || ||||| ||| | ||||||||
Sbjct 57654 TGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGGTCA 57595
Query 181481 GGACTACTTCTTTTTCCC-ACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTAC 181539
|| ||| || || ||||| ||||| ||| | ||| | || || ||| | ||||| || ||
Sbjct 57594 GGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAACAAC 57536
Query 181540 TTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTT 181599
||||| | || ||||| || || || || || |||| || | |||||| || ||
Sbjct 57535 ATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAACTT 57476
Query 181600 CCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT-T 181658
| || | ||||| || || || ||| | |||||| |||||| || || | || |
Sbjct 57475 TTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTTTAT 57417
Query 181659 GGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTT 181718
||||||| |||||||| || ||||| || ||| ||||||||| || || ||| | |
Sbjct 57416 GGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACAT 57357
Query 181719 TTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTG 181778
|||| || || ||||| || || || | || || |||||||| | ||||| ||| | |
Sbjct 57356 TTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAATCG 57297
Query 181779 CTCGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTAT 181838
| ||| | | ||| || || || || || ||||| ||||| | |||||||| || |
Sbjct 57296 CACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGTTT 57237
Query 181839 TCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTT 181898
| || |||||||| | || || || | || ||||| |||||||| ||||| |||||||
Sbjct 57236 TTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAGTT 57177
Query 181899 TCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGC 181958
| ||||| || || |||||||| || || | ||| |||| || || || || |||||
Sbjct 57176 TTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGACTT 57117
Query 181959 TCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAA 182018
| ||||| || ||||||||||||||||||||| | || || | || | || | |||||
Sbjct 57116 TGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGCAA 57057
Query 182019 TTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCA 182078
|||| || | || || || |||||||| | | |||| || ||| ||||| || ||
Sbjct 57056 TTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACATTTC 56997
Query 182079 AAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCT 182138
|| || || ||||||||| ||||||||| ||||| | || ||||| || ||||| |
Sbjct 56996 GTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCTTTT 56937
Query 182139 GGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCT 182198
|||| || || |||||| | |||||| ||||| | ||||| |||||||||||| | |
Sbjct 56936 GGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTAT 56877
Query 182199 TTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACC 182258
|||| || || | ||| | ||||| ||| | | ||| | | || | || | ||
Sbjct 56876 TTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAAATT 56817
Query 182259 TTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGA 182318
| ||||| | || || || || |||||||| | || | ||||||||||| || || |
Sbjct 56816 TACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTGAAA 56757
Query 182319 CGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCG 182378
| || || ||||| || ||||| |||||||||||| | ||||| ||| | || | |
Sbjct 56756 CTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 56697
Query 182379 ATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436
|||| || ||||| || || || ||||| ||||| || ||||| | || ||||| ||
Sbjct 56696 ATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCT 56639
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314
|||||||||||||||||| ||||| || ||||||| || ||||||||||||||| |
Sbjct 21964 TCCTCAGTAGCTCAGCGGTAGAGCGATCGGCTGTTAACCGATTGGTCGTAGGTTCAATCC 22023
Query 141315 CTACCTGGGGAG 141326
||||||||||||
Sbjct 22024 CTACCTGGGGAG 22035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610393946394960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |