Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq243 648 0.0
seq260 446 2e-120
>seq243
Length=18593
Score = 648 bits (718), Expect = 0.0
Identities = 734/984 (75%), Gaps = 0/984 (0%)
Strand=Plus/Minus
Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461
||||| |||||||||||| || | ||| | | |||||||||||||||||||||||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 169462 ATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTTGCATTCATTGCAGCACCT 169521
||||| || ||| | |||||| | | ||| || | || || || || || ||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCG 3727
Query 169522 CCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAAC 169581
|| || ||||| || || || | ||||||||| | ||||| || | ||||| || |||
Sbjct 3726 CCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAAC 3667
Query 169582 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAATC 169641
|| || ||||| || || || ||| | |||||||| || || |||| || |||||||||
Sbjct 3666 ATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAATC 3607
Query 169642 TGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATC 169701
|||||||| || || |||| |||||||| ||||||||||| ||||| || | | |
Sbjct 3606 TGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGTA 3547
Query 169702 TTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 169761
| ||||| | | || || | |||||||||| | | |||||| |||| | | |
Sbjct 3546 TGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCGT 3487
Query 169762 TTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCT 169821
||||| |||||||| |||||| ||||| || || ||||| || |||| || |||
Sbjct 3486 TTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCT 3427
Query 169822 GTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 169881
|||||| | | || ||| |||| || |||||||||||||||||||||||| |||||||
Sbjct 3426 GTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATT 3367
Query 169882 TCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCT 169941
|| ||||||||||| |||||| |||| ||||||||||| ||||||||| ||||||| ||
Sbjct 3366 TCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCCA 3307
Query 169942 TTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGT 170001
||||| ||| || || || || | || || || || ||||| || ||||||||||||
Sbjct 3306 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGGT 3247
Query 170002 TCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGT 170061
||| | || ||||| ||| |||| | |||||||| || | || || ||| ||||
Sbjct 3246 TCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGGT 3187
Query 170062 TATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 170121
|| || ||||||||| |||||||||| |||||||| ||||| || || || || || |||
Sbjct 3186 TACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGGT 3127
Query 170122 CGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCA 170181
||| | || ||||| || || || || || ||||| | | ||||||||||| ||||
Sbjct 3126 CGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGCT 3067
Query 170182 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAAC 170241
| || || ||||| || | ||||| || || | ||||| | || |||||||| |||
Sbjct 3066 GCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAAC 3007
Query 170242 TTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACA 170301
|| |||||||||||||||||||||||||| |||||| | | || | | ||
Sbjct 3006 TTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACACT 2947
Query 170302 TGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCA 170361
|||| |||| || | ||| | || || | ||||||||||||||||||||| | ||||||
Sbjct 2946 TGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCA 2887
Query 170362 CACAACTTCCCACTAGACCTAGCA 170385
||||| ||||||||||| |||||
Sbjct 2886 CACAATTTCCCACTAGATTTAGCA 2863
>seq260
Length=66046
Score = 446 bits (494), Expect = 2e-120
Identities = 724/1044 (69%), Gaps = 21/1044 (2%)
Strand=Plus/Minus
Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582
|||||||||||| | |||| |||||| | | |||||||||||||| || || |||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 170583 TCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACT 170642
|| ||||| ||| | | ||| |||||| || || | ||||||||||| || ||
Sbjct 57597 TCAGGTCTATTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAACA 57538
Query 170643 ACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAAC 170702
|| || || | || |||||||| ||||| | ||| | || ||| | ||||| || |||
Sbjct 57537 ACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAAC 57478
Query 170703 TTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 170762
|| |||| | || ||||| ||||| | | ||||| ||| | | | || |
Sbjct 57477 TTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTTA 57418
Query 170763 TGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAAC 170822
||||| || ||||| |||||| ||| |||||||| ||||| |||||| | ||||
Sbjct 57417 TGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACA 57358
Query 170823 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATC 170882
||||| ||| |||| || | ||| | || || || ||||| | ||||| || |||
Sbjct 57357 TTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAATC 57298
Query 170883 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 170942
||| | || || | || || |||||| | ||||| ||||| ||| |||||
Sbjct 57297 GCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGTT 57238
Query 170943 TTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCA 171002
|| | | ||| | || || ||| ||||||| |||||||| || |||||
Sbjct 57237 TTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAGT 57178
Query 171003 TTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 171062
|| ||||| ||||| ||||| |||| ||| |||||| | ||||||||||||||| ||
Sbjct 57177 TTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGACT 57118
Query 171063 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCC 171122
|||||||| ||||| |||||||||||||| || | ||||| | || | | |||||
Sbjct 57117 TTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGCA 57058
Query 171123 ATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAAT 171182
|||||||| |||||||| | || || | | |||||| | || |
Sbjct 57057 ATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGA--------TGGCGACGG----- 57011
Query 171183 AAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGT 171242
| |||| ||||| ||||| ||| |||| || || | |||||||||||| |
Sbjct 57010 ----TGCAAA----CACATTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCT 56959
Query 171243 ATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGA 171302
| | |||||||| | || |||||||| ||||| ||| | || || ||||| ||| |
Sbjct 56958 TTTGTAACAGCAAATCGCTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGT 56899
Query 171303 TTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGT 171362
| ||||| ||| ||||||| || || || || | ||| | ||||| || | |||
Sbjct 56898 TGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGT 56839
Query 171363 ATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCA 171422
| ||||| ||||| | || | | |||| |||||| || || ||||| || | ||
Sbjct 56838 GTAGTAGGCTTAGCATTAAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCT 56779
Query 171423 GCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATG 171482
|| ||||||||||| || || ||||| || || || ||||| ||| | |||||||||||
Sbjct 56778 GCTGAAGACCCAGAATTTGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATT 56719
Query 171483 AGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTG 171542
| || |||||| | | || || || ||||| || || ||||||||||| || ||
Sbjct 56718 CGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTT 56659
Query 171543 TTACCAAGAGGTAACGCACTTTAA 171566
|||||| | || ||||| ||||||
Sbjct 56658 TTACCACGTGGAAACGCTCTTTAA 56635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579210092180160
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