Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq243 691 0.0 seq260 520 1e-142 >seq243 Length=18593 Score = 691 bits (766), Expect = 0.0 Identities = 743/980 (76%), Gaps = 2/980 (0%) Strand=Plus/Minus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||| || |||||||||||| ||| | |||||| | ||||| |||||||| || || || Sbjct 3847 TTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCT 3788 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTC-ATCGTCGCCTTCGTCGCTGCTC 167980 ||||| || || | || ||||||||| |||||| || |||| || ||||||||| Sbjct 3787 TATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTC 3729 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || || || || || ||||| || | |||||| | | ||||| || | Sbjct 3728 CGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATA 3669 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 |||| || ||||| || || || || |||| || || ||||| | || || || || | Sbjct 3668 ACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAA 3609 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 |||||||||| || || || || || ||||| ||||| ||||| |||| |||||| | | Sbjct 3608 TCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCG 3549 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATC 168220 | | |||||| || | || || | | |||||||||| |||||||||||| | || | | Sbjct 3548 TATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCC 3489 Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 |||||||||||||||| |||||| ||||| || || ||||| || |||||||| | || Sbjct 3488 GTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTG 3429 Query 168281 CAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 168340 | |||||| | | ||||| | || |||||| |||||||||| |||||| | || | Sbjct 3428 CTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTA 3369 Query 168341 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 168400 | || || || ||||| | ||| | || |||||||| || || || ||| | ||||| | Sbjct 3368 TTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACC 3309 Query 168401 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 168460 | ||||||||||| || |||||||| ||||||||||| || ||| ||| ||||| | Sbjct 3308 CATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATG 3249 Query 168461 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 168520 | || || ||||||||| | || | || || ||||||| |||||| ||| | Sbjct 3248 GTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTG 3189 Query 168521 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 168580 ||||||| ||||||||| |||||||||| |||||||||||||| |||||||| || |||| Sbjct 3188 GTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCG 3129 Query 168581 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 168640 ||||||| || ||||||||||| || || || ||||| || || || ||||||||| | | Sbjct 3128 GTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAG 3069 Query 168641 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 168700 |||| ||||| ||||| || || ||||| || || | || | || || |||||||| | Sbjct 3068 CTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTA 3009 Query 168701 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 168760 || | || ||||||||||| ||||| || | ||||| || |||||||| | |||| Sbjct 3008 ACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACA 2949 Query 168761 CCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 168820 | ||||| ||| || | ||||| ||| ||| |||||||||||||||||||| ||||| | Sbjct 2948 CTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 2889 Query 168821 CACACAACTTCCCACTCGAT 168840 ||||||| |||||||| ||| Sbjct 2888 CACACAATTTCCCACTAGAT 2869 >seq260 Length=66046 Score = 520 bits (576), Expect = 1e-142 Identities = 729/1020 (71%), Gaps = 2/1020 (0%) Strand=Plus/Minus Query 169301 GGGTGGTTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGG 169360 || ||||| ||| | | ||||||||||| || || || |||||||| ||||| ||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 169361 TCTGGTCTACTTCTTCTTCCC-ACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTAC 169419 || |||||| || || ||||| ||||| ||| | || | || || ||| | ||||| || Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 169420 AGCGTTTGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAA 169479 | | ||||| | ||| ||||| || || || | ||| | ||| ||||| || || Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479 Query 169480 CTTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCT 169539 ||| | |||| |||||| |||||| ||| | |||||| || || | | || | Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTT 57419 Query 169540 ATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAA 169599 ||||||||| ||||| ||||| ||||| ||| ||||| ||| | || ||||| |||| Sbjct 57418 ATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGAC 57359 Query 169600 CTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATT 169659 ||||| ||||| || ||||| ||| | || ||||| || |||||| | || || ||| | Sbjct 57358 ATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAAT 57299 Query 169660 GGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGT 169719 |||||| || || || || ||||| || |||||||| |||| |||||||| || Sbjct 57298 CGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGT 57239 Query 169720 ATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTC 169779 ||||| ||| ||| | || |||||| | || || || ||||| ||||| || Sbjct 57238 TTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAG 57179 Query 169780 CTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGAC 169839 ||||| || |||| || ||| | || | || ||| | ||||| |||||||||||||| Sbjct 57178 TTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGAC 57119 Query 169840 GTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGC 169899 |||||||| || || ||||||||||| || || | | || | || | |||| ||| Sbjct 57118 TTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGC 57059 Query 169900 TATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTT 169959 || ||||| | |||||||| || || | | |||||| || || ||||| || || Sbjct 57058 AATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACATT 56999 Query 169960 CAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTT 170019 |||||| || | || || | |||||| ||||||||| | || || ||||| ||||| Sbjct 56998 TCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCTT 56939 Query 170020 CTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTT 170079 ||||| || || |||||| | ||||||||||| || |||||| | ||||| || ||||| Sbjct 56938 TTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 56879 Query 170080 GTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAA 170139 ||||| || || | ||| | ||||| || |||| | | ||| | || | || Sbjct 56878 ATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAAA 56819 Query 170140 TCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGA 170199 | | ||||| | ||||||||| || || || | || || ||||| ||||||||||| Sbjct 56818 TTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTGA 56759 Query 170200 GACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGC 170259 || || || || ||||| || || ||||||||||| ||||||| ||| |||| || Sbjct 56758 AACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 56699 Query 170260 TGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 ||||| || |||||||| || | |||||||| || ||| | || | || ||||| || Sbjct 56698 AGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCT 56639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574470914335920