Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq243 609 3e-169 seq260 417 1e-111 >seq243 Length=18593 Score = 609 bits (674), Expect = 3e-169 Identities = 721/977 (74%), Gaps = 0/977 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 || || || |||||||| ||| | ||| | | |||||||||||||| ||||| || Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | |||||| | | || || | || || || || || || Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCG 3727 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | |||||||| | ||||| || ||||||| || ||| Sbjct 3726 CCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAAC 3667 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || || ||||| || || || ||| | ||||||||||| ||| | || || ||||| ||| Sbjct 3666 ATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAATC 3607 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| || | | || |||||||| || |||||||| ||||| || | | | Sbjct 3606 TGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGTA 3547 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | ||||| | | || || | |||||||||| | | |||||| |||| | | | Sbjct 3546 TGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCGT 3487 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 ||||||||| | || ||||| || || |||||||||||||| | ||||| |||| Sbjct 3486 TTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCT 3427 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| || | |||||| | || || |||||||||||||||||||||||| ||||||| Sbjct 3426 GTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATT 3367 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| ||||| |||||| |||| ||||||||||| ||||||||| ||||||| || Sbjct 3366 TCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCCA 3307 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 ||||| ||| || || || || | ||||| || || ||||| || |||||||| ||| Sbjct 3306 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGGT 3247 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || ||||| || |||||| |||| | || ||||||||| ||||| ||| || Sbjct 3246 TCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGGT 3187 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 ||||| ||||||||| |||||||||| |||||||| ||||| || || || || || ||| Sbjct 3186 TACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGGT 3127 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 ||| | || ||||| || || ||||| || ||||| | | | ||||||||| |||| Sbjct 3126 CGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGCT 3067 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || || ||||| || | ||||| || || | ||||| | || |||||||| ||| Sbjct 3066 GCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAAC 3007 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 | || ||||||||||| ||||||||||| || ||| | | ||| || || || Sbjct 3006 TTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACACT 2947 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779 |||| ||| || ||||| | || || || ||||||||||||||||||||| | |||||| Sbjct 2946 TGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCA 2887 Query 172780 CACAACTTCCCATTAGA 172796 ||||| |||||| |||| Sbjct 2886 CACAATTTCCCACTAGA 2870 >seq260 Length=66046 Score = 417 bits (462), Expect = 1e-111 Identities = 721/1045 (69%), Gaps = 23/1045 (2%) Strand=Plus/Minus Query 172945 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGG 173004 |||||||||||| | |||| |||||| | | |||||||| ||||| || || ||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 173005 TCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACT 173064 || ||||| ||| | | ||| ||| || | | | ||||||||||| ||||| Sbjct 57597 TCAGGTCTATTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAACA 57538 Query 173065 ACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAAC 173124 || || || | || |||||||| ||||| | || |||| ||| | || || ||| Sbjct 57537 ACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAAC 57478 Query 173125 TTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 173184 |||||||| | || || || ||||| | | ||||| ||| | | | || | Sbjct 57477 TTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTTA 57418 Query 173185 TGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAAC 173244 ||||| || ||||| |||||| || ||||||| ||||| ||||| || |||| Sbjct 57417 TGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACA 57358 Query 173245 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATC 173304 ||||| ||| |||| || | ||| | || || || ||||| ||||| || || ||| Sbjct 57357 TTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAATC 57298 Query 173305 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 173364 ||| | || || | || || |||||| | ||||| ||||| ||| ||||| Sbjct 57297 GCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGTT 57238 Query 173365 TTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCA 173424 || | | |||||||| |||||| |||| || |||||||| || ||||| Sbjct 57237 TTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAGT 57178 Query 173425 TTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 173484 || ||||| ||||| || || |||| ||| |||||| | ||||||||||||||| || Sbjct 57177 TTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGACT 57118 Query 173485 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCC 173544 |||||||| ||||| |||||||||||||| || | ||||| | || | || ||||| Sbjct 57117 TTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGCA 57058 Query 173545 ATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGT 173604 |||||||| |||||||| | || || | | |||||| || | Sbjct 57057 ATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGA---------------TG--GCG 57015 Query 173605 AAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGT 173664 | | | ||| ||| |||| | || ||| |||| || || | ||||||||||||| | Sbjct 57014 ACGGTGCAA---ACACATTTC-GTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCT 56959 Query 173665 ATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGA 173724 | | ||||| || | || |||||||| ||||| ||| | || ||||| || ||| | Sbjct 56958 TTTGTAACAGCAAATCGCTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGT 56899 Query 173725 TTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGT 173784 | ||||| ||| | ||||| || ||||| || | ||| | ||||| | | ||| Sbjct 56898 TGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGT 56839 Query 173785 ATCGTAGGTCTTGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGC 173843 | ||||| | ||| |||| ||| | |||| ||| || || || ||||| || | || Sbjct 56838 GTAGTAGGCTTAGCA-TTAAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGC 56780 Query 173844 AGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 173903 || ||||| ||||| || || ||||| || || || ||||| ||| | ||||||||||| Sbjct 56779 TGCTGAAGACCCAGAATTTGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTAT 56720 Query 173904 GAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGT 173963 | || |||||| | || |||||| || ||||| || || ||||| ||||| || || Sbjct 56719 TCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGT 56660 Query 173964 GTTACCAAGAGGTAACGCACTTTAA 173988 |||||| | || ||||| |||||| Sbjct 56659 TTTACCACGTGGAAACGCTCTTTAA 56635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588048450860640