Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq243 609 3e-169
seq260 417 1e-111
>seq243
Length=18593
Score = 609 bits (674), Expect = 3e-169
Identities = 721/977 (74%), Gaps = 0/977 (0%)
Strand=Plus/Minus
Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879
|| || || |||||||| ||| | ||| | | |||||||||||||| ||||| ||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939
|||||||| || | |||||| | | || || | || || || || || ||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCG 3727
Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999
|| || ||||| || || || | |||||||| | ||||| || ||||||| || |||
Sbjct 3726 CCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAAC 3667
Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059
|| || ||||| || || || ||| | ||||||||||| ||| | || || ||||| |||
Sbjct 3666 ATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAATC 3607
Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119
|||||||| || | | || |||||||| || |||||||| ||||| || | | |
Sbjct 3606 TGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGTA 3547
Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179
| ||||| | | || || | |||||||||| | | |||||| |||| | | |
Sbjct 3546 TGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCGT 3487
Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239
||||||||| | || ||||| || || |||||||||||||| | ||||| ||||
Sbjct 3486 TTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCT 3427
Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299
|| ||| || | |||||| | || || |||||||||||||||||||||||| |||||||
Sbjct 3426 GTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATT 3367
Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359
|| ||||| ||||| |||||| |||| ||||||||||| ||||||||| ||||||| ||
Sbjct 3366 TCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCCA 3307
Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419
||||| ||| || || || || | ||||| || || ||||| || |||||||| |||
Sbjct 3306 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGGT 3247
Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479
|| ||||| || |||||| |||| | || ||||||||| ||||| ||| ||
Sbjct 3246 TCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGGT 3187
Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539
||||| ||||||||| |||||||||| |||||||| ||||| || || || || || |||
Sbjct 3186 TACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGGT 3127
Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599
||| | || ||||| || || ||||| || ||||| | | | ||||||||| ||||
Sbjct 3126 CGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGCT 3067
Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659
| || || ||||| || | ||||| || || | ||||| | || |||||||| |||
Sbjct 3066 GCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAAC 3007
Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719
| || ||||||||||| ||||||||||| || ||| | | ||| || || ||
Sbjct 3006 TTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACACT 2947
Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779
|||| ||| || ||||| | || || || ||||||||||||||||||||| | ||||||
Sbjct 2946 TGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCA 2887
Query 172780 CACAACTTCCCATTAGA 172796
||||| |||||| ||||
Sbjct 2886 CACAATTTCCCACTAGA 2870
>seq260
Length=66046
Score = 417 bits (462), Expect = 1e-111
Identities = 721/1045 (69%), Gaps = 23/1045 (2%)
Strand=Plus/Minus
Query 172945 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGG 173004
|||||||||||| | |||| |||||| | | |||||||| ||||| || || |||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 173005 TCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACT 173064
|| ||||| ||| | | ||| ||| || | | | ||||||||||| |||||
Sbjct 57597 TCAGGTCTATTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAACA 57538
Query 173065 ACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAAC 173124
|| || || | || |||||||| ||||| | || |||| ||| | || || |||
Sbjct 57537 ACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAAC 57478
Query 173125 TTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 173184
|||||||| | || || || ||||| | | ||||| ||| | | | || |
Sbjct 57477 TTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTTA 57418
Query 173185 TGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAAC 173244
||||| || ||||| |||||| || ||||||| ||||| ||||| || ||||
Sbjct 57417 TGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACA 57358
Query 173245 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATC 173304
||||| ||| |||| || | ||| | || || || ||||| ||||| || || |||
Sbjct 57357 TTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAATC 57298
Query 173305 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 173364
||| | || || | || || |||||| | ||||| ||||| ||| |||||
Sbjct 57297 GCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGTT 57238
Query 173365 TTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCA 173424
|| | | |||||||| |||||| |||| || |||||||| || |||||
Sbjct 57237 TTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAGT 57178
Query 173425 TTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 173484
|| ||||| ||||| || || |||| ||| |||||| | ||||||||||||||| ||
Sbjct 57177 TTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGACT 57118
Query 173485 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCC 173544
|||||||| ||||| |||||||||||||| || | ||||| | || | || |||||
Sbjct 57117 TTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGCA 57058
Query 173545 ATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGT 173604
|||||||| |||||||| | || || | | |||||| || |
Sbjct 57057 ATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGA---------------TG--GCG 57015
Query 173605 AAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGT 173664
| | | ||| ||| |||| | || ||| |||| || || | ||||||||||||| |
Sbjct 57014 ACGGTGCAA---ACACATTTC-GTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCT 56959
Query 173665 ATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGA 173724
| | ||||| || | || |||||||| ||||| ||| | || ||||| || ||| |
Sbjct 56958 TTTGTAACAGCAAATCGCTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGT 56899
Query 173725 TTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGT 173784
| ||||| ||| | ||||| || ||||| || | ||| | ||||| | | |||
Sbjct 56898 TGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGT 56839
Query 173785 ATCGTAGGTCTTGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGC 173843
| ||||| | ||| |||| ||| | |||| ||| || || || ||||| || | ||
Sbjct 56838 GTAGTAGGCTTAGCA-TTAAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGC 56780
Query 173844 AGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 173903
|| ||||| ||||| || || ||||| || || || ||||| ||| | |||||||||||
Sbjct 56779 TGCTGAAGACCCAGAATTTGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTAT 56720
Query 173904 GAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGT 173963
| || |||||| | || |||||| || ||||| || || ||||| ||||| || ||
Sbjct 56719 TCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGT 56660
Query 173964 GTTACCAAGAGGTAACGCACTTTAA 173988
|||||| | || ||||| ||||||
Sbjct 56659 TTTACCACGTGGAAACGCTCTTTAA 56635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588048450860640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |