Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq243 668 0.0 seq260 549 2e-151 >seq243 Length=18593 Score = 668 bits (740), Expect = 0.0 Identities = 742/987 (75%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 ||| || ||||||||||| || | |||||| | ||||| |||||||| || || || Sbjct 3847 TTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCT 3788 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTC-ATCGTCGCCTTCGTCGCTGCTC 162502 ||||| || || | || ||||||| | |||||| || |||| || ||||||||| Sbjct 3787 TATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTC 3729 Query 162503 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 162562 | || || || || || || || || ||||| || | |||||| | | ||||| || | Sbjct 3728 CGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATA 3669 Query 162563 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 162622 |||| || ||||| || || || ||| |||| |||||||||||| | || || || || | Sbjct 3668 ACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAA 3609 Query 162623 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 162682 |||||||||| || || ||||| || ||| | ||||| ||||| |||| |||||| | | Sbjct 3608 TCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCG 3549 Query 162683 TATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACC 162742 ||| ||||| | | || || | | | |||||||| |||||||||||| | |||| || Sbjct 3548 TATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCC 3489 Query 162743 GTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 || | ||||||||||| |||||| || || || || ||||||||||| ||||| | | Sbjct 3488 GTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTG 3429 Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862 | || ||| | | ||||| | || |||||||| |||||||| | ||||| || |||| Sbjct 3428 CTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTA 3369 Query 162863 TCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATC 162922 | |||||| ||||| | ||| | || ||||||||||| || |||||| | ||||| | Sbjct 3368 TTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACC 3309 Query 162923 CCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACG 162982 | ||||| ||| | ||||| || ||||| || ||||||||| | || ||||||||| | Sbjct 3308 CATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATG 3249 Query 162983 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 163042 |||| || || || ||||| | | ||||| || ||||||| || || ||| || Sbjct 3248 GTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTG 3189 Query 163043 GTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCG 163102 ||||||| ||||| ||| ||||||| || ||||||||||| || || ||||| || |||| Sbjct 3188 GTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCG 3129 Query 163103 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 163162 ||||||| || |||||||| ||||| || || ||||| ||||| || ||||||||| | | Sbjct 3128 GTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAG 3069 Query 163163 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 163222 |||| ||||| ||||| || || ||||| || || | || | ||||| |||||||| | Sbjct 3068 CTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTA 3009 Query 163223 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 163282 || | || ||||||||||| ||||| || | ||||| || |||||||| | |||| Sbjct 3008 ACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACA 2949 Query 163283 CCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATG 163342 | ||||| || || | |||||||| | | ||||||||||||||||| || || |||| Sbjct 2948 CTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 2889 Query 163343 CTCACAACTTCCCACTTGACCTGGCAG 163369 | ||||| |||||||| || | |||| Sbjct 2888 CACACAATTTCCCACTAGATTTAGCAG 2862 >seq260 Length=66046 Score = 549 bits (608), Expect = 2e-151 Identities = 739/1026 (72%), Gaps = 2/1026 (0%) Strand=Plus/Minus Query 163615 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGG 163674 || ||||||||| || | |||||||||||| || |||||||| ||||||||||| ||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 163675 TCTGGATTACTACTTCTTCCC-ACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTAC 163733 || || || || || ||||| ||||| ||| | ||| | ||||| ||| | ||||| || Sbjct 57597 TCAGGTCTATTA-TTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 163734 AACTTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAA 163793 ||| || || | || ||||| || ||||| | || ||||| ||| | |||||| || Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479 Query 163794 TTTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCT 163853 ||| | || | ||||| || || || ||| | |||||| |||||| | | || | Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTT 57419 Query 163854 CTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAA 163913 |||||||| || ||||| || ||||| || ||| ||||||||| || || |||| Sbjct 57418 ATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGAC 57359 Query 163914 TTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACT 163973 ||||| ||||| ||||| || ||| || | ||||| || |||||||| ||||| ||| | Sbjct 57358 ATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAAT 57299 Query 163974 TGCTCGCCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGT 164033 || || || ||| | || || || || ||||| || |||| |||||||| || Sbjct 57298 CGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGT 57239 Query 164034 CTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATC 164093 || ||| ||| ||| | || ||||| | |||||||| |||||||| || || || Sbjct 57238 TTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAG 57179 Query 164094 TTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGAC 164153 |||||| || ||||| || ||| | || | |||||| | ||||| || || |||||||| Sbjct 57178 TTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGAC 57119 Query 164154 TTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGC 164213 |||||| || || ||||||||||| ||||||||| | ||||| | || | || | ||| Sbjct 57118 TTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGC 57059 Query 164214 TATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTT 164273 ||||| || | ||||| |||||||| | | ||||||||| || |||||||| || Sbjct 57058 AATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACATT 56999 Query 164274 TAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTT 164333 | |||||| || | || || | |||||| ||||||||| | || || ||||| ||||| Sbjct 56998 TCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCTT 56939 Query 164334 CTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 164393 ||||| || || |||||||| ||||||||||| || || ||| | ||||| || ||||| Sbjct 56938 TTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 56879 Query 164394 GTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAA 164453 ||||| || || | ||| ||||||| || |||| | | ||| | || | || Sbjct 56878 ATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAAA 56819 Query 164454 TCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGA 164513 | | ||||| | |||||| || ||||| ||| | || || ||||| || || || || Sbjct 56818 TTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTGA 56759 Query 164514 GACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGT 164573 ||||| ||||| || || || | ||||| ||||| | ||||| ||| | || | Sbjct 56758 AACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 56699 Query 164574 TGACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCT 164633 || ||||| ||| || || |||||||| || || | || | || || || || Sbjct 56698 AGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCT 56639 Query 164634 TTAATA 164639 |||||| Sbjct 56638 TTAATA 56633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557581393294800