Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq243 655 0.0
>seq243
Length=18593
Score = 655 bits (726), Expect = 0.0
Identities = 735/983 (75%), Gaps = 0/983 (0%)
Strand=Plus/Minus
Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353
|||||||||||||| || ||||| || || | || ||||||||||||||||| ||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413
||||| ||| | | |||| || ||| ||| || | || || |||||||| ||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCG 3727
Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473
|| || ||||| || || || | || ||||| | ||||| ||| | ||||| || |||
Sbjct 3726 CCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAAC 3667
Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533
|| || ||||| ||||| ||||| | |||||||||||| || ||||| || ||||| |||
Sbjct 3666 ATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAATC 3607
Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593
|||||||| || | ||||||||||| | || ||||||||||||| |||||| | |
Sbjct 3606 TGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGTA 3547
Query 215594 TTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGA 215653
| ||||| || | || |||| | ||||| || | | |||||| | |||| | |
Sbjct 3546 TGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCGT 3487
Query 215654 TTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCA 215713
||||||||| | || |||||| |||||||| || |||||||| |||| || |||
Sbjct 3486 TTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCT 3427
Query 215714 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATC 215773
|||||| || | |||||| | || || ||||| |||||||||| ||||||| | || ||
Sbjct 3426 GTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATT 3367
Query 215774 TCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCA 215833
||||| || ||||| | ||| | || ||||| || || || |||||| | |||||||||
Sbjct 3366 TCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCCA 3307
Query 215834 TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGT 215893
||||| ||| | ||||| |||||||| || ||||||||||| || ||||||||||| |||
Sbjct 3306 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGGT 3247
Query 215894 TCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGT 215953
||| | || || |||||| |||| | || |||||||| | |||||| ||| |||
Sbjct 3246 TCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGGT 3187
Query 215954 TACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGT 216013
||||| ||||||||| | || ||||| ||||||||||||||||| || || || || |||
Sbjct 3186 TACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGGT 3127
Query 216014 CGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCA 216073
|| | || ||||||||||||||||| || ||||| | | | ||||||||| | ||
Sbjct 3126 CGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGCT 3067
Query 216074 GCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAAC 216133
|| | || ||| || |||| ||| ||||| | ||| | ||||||||||| || |||
Sbjct 3066 GCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAAC 3007
Query 216134 CTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACT 216193
| || ||||||||||| ||||| || || || || || ||| |||||| |||
Sbjct 3006 TTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACACT 2947
Query 216194 TGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCT 216253
||||| || || ||||| | || |||||||||||||| ||||| || ||||| ||
Sbjct 2946 TGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCA 2887
Query 216254 CACAACTTCCCATTAGACTTGGC 216276
||||| |||||| |||| || ||
Sbjct 2886 CACAATTTCCCACTAGATTTAGC 2864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 745078116743520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |