Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq243 632 2e-176 seq260 618 5e-172 >seq243 Length=18593 Score = 632 bits (700), Expect = 2e-176 Identities = 731/983 (74%), Gaps = 10/983 (1%) Strand=Plus/Minus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 |||||| |||||||| || ||| | ||||| | ||||| |||||||| |||||||| Sbjct 3847 TTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCT 3788 Query 164823 TATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTTATTACTGCATTCATCGCTGCTCC 164882 ||||||||| || | | || || | | |||||||| || || ||||||||||| Sbjct 3787 TATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728 Query 164883 CCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAA 164942 || || || |||||||||||||| ||||| || ||||||| || | || || || || Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668 Query 164943 CATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTAT 165002 ||| || ||||| ||||| || || |||| |||||||| || | || || || || || Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608 Query 165003 TTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGT 165062 ||||||||||| | | || |||||||| || || ||||| |||||||| | | || Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548 Query 165063 CTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 165122 | ||||| || | || | || |||||||||||||| |||||| | |||| ||| Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488 Query 165123 CCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGC 165182 | ||||||||||| ||||| || || ||| |||||||| ||||| ||| | || Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428 Query 165183 AGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTAT 165242 || ||| | | ||||| | || ||||| ||||||||||||||||| | ||||| Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368 Query 165243 CTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCC 165302 ||||||||||| || | |||| |||| ||||||||||||||||||||| | ||||| || Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308 Query 165303 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 165362 ||||| ||||| || |||||||| ||||| ||||| || | || ||||| |||||||| Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248 Query 165363 AAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGG 165422 | || ||||| || | | || || |||||||||| || | ||| || Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188 Query 165423 TTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGG 165482 ||| || || |||||| ||||||| || || |||||||| ||||| || || || ||||| Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128 Query 165483 TCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGC 165542 |||| | ||||||||||||||||| || || || || ||||| | ||||||||| | || Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068 Query 165543 AGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 165602 || ||||| || |||||||| ||||| |||||| | ||| || || |||||||| || Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008 Query 165603 CCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATC-----ATC 165657 | | || ||||||||||| ||||| || | |||||| || |||| || || Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGAT--TC---ACAAGGTCGTGTTATT 2953 Query 165658 CCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGT 165717 ||||||||||| || | ||||||||| ||| |||||||||||||||||||| ||| Sbjct 2952 AACACTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 2893 Query 165718 AACGCTCACAACTTCCCCCTCGA 165740 || || ||||| ||||| || || Sbjct 2892 AATGCACACAATTTCCCACTAGA 2870 >seq260 Length=66046 Score = 618 bits (684), Expect = 5e-172 Identities = 753/1024 (74%), Gaps = 2/1024 (0%) Strand=Plus/Minus Query 166155 GGGTGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGG 166214 || ||||| ||| || |||| ||||||||| || |||||||| || ||| |||| ||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 166215 TCTGGACTTCTTCTTCTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGAC 166273 || || || || || ||||| ||||| ||| | || | || |||||| | ||||| || Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 166274 TACTTTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAA 166333 || || || | ||||||||||||||| | || | |||| | |||||| || Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479 Query 166334 CTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCT 166393 |||| | |||| || |||||||| || || || |||||| |||||| || | || | Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTT 57419 Query 166394 CTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGC 166453 |||||||| || |||||||| ||||| | ||||||||||||||||| |||||| | Sbjct 57418 ATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGAC 57359 Query 166454 CTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAAT 166513 |||||||| || |||||||||||| | ||||||| || |||||||| || || ||||| Sbjct 57358 ATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAAT 57299 Query 166514 CGCTCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGT 166573 ||| ||| ||| ||||| || || || ||||| || ||||||| |||||||| || Sbjct 57298 CGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGT 57239 Query 166574 CTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATC 166633 || ||| ||| ||| | || ||||| | |||||||| ||||||||||| || || Sbjct 57238 TTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAG 57179 Query 166634 TTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGAC 166693 ||| || || |||| || ||||| || | | ||| | ||||| |||||||||||||| Sbjct 57178 TTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGAC 57119 Query 166694 ACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGC 166753 |||| || ||||||||||||||||| || ||| |||| || | ||| | |||| ||| Sbjct 57118 TTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGC 57059 Query 166754 CATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTT 166813 || ||||| | |||||||| || ||||| | | ||||||| || ||||| || || Sbjct 57058 AATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACATT 56999 Query 166814 CAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTA 166873 || || | | ||||||| |||||||| ||||| | || |||||||| |||| Sbjct 56998 TCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCTT 56939 Query 166874 TTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCT 166933 |||||| || || |||||| | |||||| |||||| | ||||| |||||||||||| | Sbjct 56938 TTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 56879 Query 166934 GTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAA 166993 ||||| || || | ||| | ||||| ||| | | ||| | | || | || | || Sbjct 56878 ATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAAA 56819 Query 166994 CCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGA 167053 | ||||| | || || ||||| |||||| | | || || || || || || ||||| Sbjct 56818 TTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTGA 56759 Query 167054 AACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTAT 167113 ||| || ||||| || || ||||| |||||||| ||||| ||| |||||||||| || Sbjct 56758 AACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 56699 Query 167114 CGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCT 167173 ||||| |||||||| | || |||||||| || |||||| | || | || |||||||| Sbjct 56698 AGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCT 56639 Query 167174 CTAA 167177 ||| Sbjct 56638 TTAA 56635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563658164885760