Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_015290.1
Length=182180
Score E
Sequences producing significant alignments: (Bits) Value
seq243 632 2e-176
>seq243
Length=18593
Score = 632 bits (700), Expect = 2e-176
Identities = 736/993 (74%), Gaps = 0/993 (0%)
Strand=Plus/Minus
Query 169681 TGGCCTCAGTTTACTGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTC 169740
||| ||| ||| ||| |||||||||||||| | |||||| | ||||||||||||||
Sbjct 3855 TGGGCTCGTTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTT 3796
Query 169741 GGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATC 169800
||||| | |||||||| ||||| ||||| | || ||||| | ||||| |||
Sbjct 3795 GGTGTTCTTATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATC 3736
Query 169801 GCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTAT 169860
|| ||||| || || || || ||||| || | ||||| ||| |||||||||| | |||
Sbjct 3735 GCTGCTCCGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATAT 3676
Query 169861 GGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTC 169920
|| || ||||| || ||||| || || || ||| ||||||||||||| ||| | || ||
Sbjct 3675 GGAAATAACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTT 3616
Query 169921 TATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAA 169980
|| || || |||||||| || |||| || || ||||| ||||| ||||| ||||| |||
Sbjct 3615 TACCCAATCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAA 3556
Query 169981 TTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTA 170040
| | | | ||||| | | ||||| | | | ||||||||| | | |||||| ||
Sbjct 3555 CTTATCGTATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTA 3496
Query 170041 TCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCA 170100
|| | |||||||||||||||||| |||||| || || ||||| || || || | |||
Sbjct 3495 TCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCA 3436
Query 170101 GCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCT 170160
|| ||||||||| | | ||||| | || || || || ||||| || || |||||
Sbjct 3435 GCTACTGCTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCA 3376
Query 170161 CTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTT 170220
||||||| || ||||| || || || ||| |||||||||||||||| || |||||| |
Sbjct 3375 TTAGGTATTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTA 3316
Query 170221 ATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCA 170280
|||||||||||||||||| || ||||||||| | || || || || | || || |||
Sbjct 3315 ATGCACCCATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCA 3256
Query 170281 ATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAG 170340
||||| |||||| | ||||| |||||| |||| | || ||||| || ||||| ||
Sbjct 3255 ATGCATGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCT 3196
Query 170341 AACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGA 170400
||| ||| ||||||||||||||| |||||||||| |||||||| || || || ||||||
Sbjct 3195 AACGTTGGTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGA 3136
Query 170401 TACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTC 170460
|| || ||| | | || |||||||| || ||||| || |||| | | ||||||
Sbjct 3135 TATTTCGGTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTC 3076
Query 170461 TTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATG 170520
||| | ||| | | || || || | || ||||| ||| | | ||||||| || |||
Sbjct 3075 TTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATG 3016
Query 170521 GCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTA 170580
||||||||| | ||||| || ||||| ||||| ||| | || ||| | ||| ||
Sbjct 3015 GCATTTAACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTT 2956
Query 170581 GTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAG 170640
|| || ||||| || || ||||| | || || || ||||||||||| ||||||||
Sbjct 2955 ATTAACACTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAA 2896
Query 170641 CGTAATGCACACAACTTCCCACTTGACTTGGCA 170673
|||||||||||||| |||||||| || || |||
Sbjct 2895 CGTAATGCACACAATTTCCCACTAGATTTAGCA 2863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582845275185600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |