Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq243 632 2e-176 >seq243 Length=18593 Score = 632 bits (700), Expect = 2e-176 Identities = 736/993 (74%), Gaps = 0/993 (0%) Strand=Plus/Minus Query 169681 TGGCCTCAGTTTACTGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTC 169740 ||| ||| ||| ||| |||||||||||||| | |||||| | |||||||||||||| Sbjct 3855 TGGGCTCGTTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTT 3796 Query 169741 GGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATC 169800 ||||| | |||||||| ||||| ||||| | || ||||| | ||||| ||| Sbjct 3795 GGTGTTCTTATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATC 3736 Query 169801 GCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTAT 169860 || ||||| || || || || ||||| || | ||||| ||| |||||||||| | ||| Sbjct 3735 GCTGCTCCGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATAT 3676 Query 169861 GGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTC 169920 || || ||||| || ||||| || || || ||| ||||||||||||| ||| | || || Sbjct 3675 GGAAATAACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTT 3616 Query 169921 TATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAA 169980 || || || |||||||| || |||| || || ||||| ||||| ||||| ||||| ||| Sbjct 3615 TACCCAATCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAA 3556 Query 169981 TTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTA 170040 | | | | ||||| | | ||||| | | | ||||||||| | | |||||| || Sbjct 3555 CTTATCGTATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTA 3496 Query 170041 TCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCA 170100 || | |||||||||||||||||| |||||| || || ||||| || || || | ||| Sbjct 3495 TCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCA 3436 Query 170101 GCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCT 170160 || ||||||||| | | ||||| | || || || || ||||| || || ||||| Sbjct 3435 GCTACTGCTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCA 3376 Query 170161 CTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTT 170220 ||||||| || ||||| || || || ||| |||||||||||||||| || |||||| | Sbjct 3375 TTAGGTATTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTA 3316 Query 170221 ATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCA 170280 |||||||||||||||||| || ||||||||| | || || || || | || || ||| Sbjct 3315 ATGCACCCATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCA 3256 Query 170281 ATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAG 170340 ||||| |||||| | ||||| |||||| |||| | || ||||| || ||||| || Sbjct 3255 ATGCATGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCT 3196 Query 170341 AACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGA 170400 ||| ||| ||||||||||||||| |||||||||| |||||||| || || || |||||| Sbjct 3195 AACGTTGGTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGA 3136 Query 170401 TACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTC 170460 || || ||| | | || |||||||| || ||||| || |||| | | |||||| Sbjct 3135 TATTTCGGTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTC 3076 Query 170461 TTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATG 170520 ||| | ||| | | || || || | || ||||| ||| | | ||||||| || ||| Sbjct 3075 TTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATG 3016 Query 170521 GCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTA 170580 ||||||||| | ||||| || ||||| ||||| ||| | || ||| | ||| || Sbjct 3015 GCATTTAACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTT 2956 Query 170581 GTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAG 170640 || || ||||| || || ||||| | || || || ||||||||||| |||||||| Sbjct 2955 ATTAACACTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAA 2896 Query 170641 CGTAATGCACACAACTTCCCACTTGACTTGGCA 170673 |||||||||||||| |||||||| || || ||| Sbjct 2895 CGTAATGCACACAATTTCCCACTAGATTTAGCA 2863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582845275185600