Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq243 672 0.0
>seq243
Length=18593
Score = 672 bits (744), Expect = 0.0
Identities = 739/978 (76%), Gaps = 14/978 (1%)
Strand=Plus/Plus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
||||| || ||||| |||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 2876 GGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAATA 2935
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTG----AA 84100
| ||| ||||| || || | |||||| ||| ||| || | ||||||| ||
Sbjct 2936 ATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTA----CTGATTGGTTAAA 2991
Query 84101 GTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCC 84160
||| || ||||| | ||||||||||| || || ||| | ||||| ||||||||| ||
Sbjct 2992 GTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATACC 3051
Query 84161 AACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATA 84220
||| |||||||||||||| ||||| ||||| | ||||||| || || || || || ||
Sbjct 3052 AACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAAGATGCGTA 3111
Query 84221 CTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTC 84280
||||| || | ||||||||| || || |||||||| || || || |||||||| ||||
Sbjct 3112 TTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTTTCTTCTTG 3171
Query 84281 TTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGA 84340
||| ||||| ||||||||| ||| || | ||||| || ||||| || |||| |||
Sbjct 3172 TTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGAATTAAAGA 3231
Query 84341 AGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAAC 84400
|||||| || | |||||||||||||||||| |||| | ||||| ||||||||||||||
Sbjct 3232 AGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACACCAGCAAC 3291
Query 84401 TCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTA 84460
|| | ||| || || || ||||| | ||||||||||| || ||||| || | ||| |
Sbjct 3292 ACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACGATCATAAA 3351
Query 84461 GTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGG 84520
||||| || || || ||||| | |||||| ||||||||||| |||||||| || | ||
Sbjct 3352 ATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGTCCAATTGG 3411
Query 84521 ATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCA 84580
||| | || ||||||||||| || || ||||| || || || |||||||| ||||||
Sbjct 3412 ATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACTGCGATCCA 3471
Query 84581 TGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTA--AGCAAATGCA 84638
||||||||||| | ||| | || | ||||||||||||||||||||| | |||||
Sbjct 3472 CGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGAACAAAT--T 3529
Query 84639 CCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCC 84698
|| | | |||||| | || | |||||| ||||||||||||||||||| |||||||||
Sbjct 3530 CCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCATTCGTCA 3589
Query 84699 ATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACT 84758
| | || |||||||| || || || ||||||| |||||| || || || | ||| |||
Sbjct 3590 AGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTTGGTACT 3649
Query 84759 ACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATA 84818
|| || |||||||| ||||| ||||| || | | ||||| | ||||| || || |||
Sbjct 3650 ACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCGCGAATA 3709
Query 84819 CCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGAT-GAAACAGACAGTGGCAGC 84877
|| |||||||| ||||| || ||| | | || || || || |||||| ||| || |
Sbjct 3710 CCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAG-TAGTTGCTGT 3768
Query 84878 AAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGA 84937
| || || || ||||||||| ||||||||||||||||| | ||||| | ||||
Sbjct 3769 TAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCAGTGCT 3828
Query 84938 GGTGACCCAATCACAGAA 84955
|| ||||| ||||| ||
Sbjct 3829 TGTTACCCACTCACAAAA 3846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571270929295920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |