Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq243 672 0.0 >seq243 Length=18593 Score = 672 bits (744), Expect = 0.0 Identities = 739/978 (76%), Gaps = 14/978 (1%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| || ||||| |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 2876 GGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAATA 2935 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTG----AA 84100 | ||| ||||| || || | |||||| ||| ||| || | ||||||| || Sbjct 2936 ATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTA----CTGATTGGTTAAA 2991 Query 84101 GTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCC 84160 ||| || ||||| | ||||||||||| || || ||| | ||||| ||||||||| || Sbjct 2992 GTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATACC 3051 Query 84161 AACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATA 84220 ||| |||||||||||||| ||||| ||||| | ||||||| || || || || || || Sbjct 3052 AACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAAGATGCGTA 3111 Query 84221 CTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTC 84280 ||||| || | ||||||||| || || |||||||| || || || |||||||| |||| Sbjct 3112 TTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTTTCTTCTTG 3171 Query 84281 TTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGA 84340 ||| ||||| ||||||||| ||| || | ||||| || ||||| || |||| ||| Sbjct 3172 TTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGAATTAAAGA 3231 Query 84341 AGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAAC 84400 |||||| || | |||||||||||||||||| |||| | ||||| |||||||||||||| Sbjct 3232 AGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACACCAGCAAC 3291 Query 84401 TCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTA 84460 || | ||| || || || ||||| | ||||||||||| || ||||| || | ||| | Sbjct 3292 ACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACGATCATAAA 3351 Query 84461 GTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGG 84520 ||||| || || || ||||| | |||||| ||||||||||| |||||||| || | || Sbjct 3352 ATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGTCCAATTGG 3411 Query 84521 ATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCA 84580 ||| | || ||||||||||| || || ||||| || || || |||||||| |||||| Sbjct 3412 ATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACTGCGATCCA 3471 Query 84581 TGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTA--AGCAAATGCA 84638 ||||||||||| | ||| | || | ||||||||||||||||||||| | ||||| Sbjct 3472 CGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGAACAAAT--T 3529 Query 84639 CCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCC 84698 || | | |||||| | || | |||||| ||||||||||||||||||| ||||||||| Sbjct 3530 CCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCATTCGTCA 3589 Query 84699 ATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACT 84758 | | || |||||||| || || || ||||||| |||||| || || || | ||| ||| Sbjct 3590 AGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTTGGTACT 3649 Query 84759 ACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATA 84818 || || |||||||| ||||| ||||| || | | ||||| | ||||| || || ||| Sbjct 3650 ACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCGCGAATA 3709 Query 84819 CCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGAT-GAAACAGACAGTGGCAGC 84877 || |||||||| ||||| || ||| | | || || || || |||||| ||| || | Sbjct 3710 CCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAG-TAGTTGCTGT 3768 Query 84878 AAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGA 84937 | || || || ||||||||| ||||||||||||||||| | ||||| | |||| Sbjct 3769 TAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCAGTGCT 3828 Query 84938 GGTGACCCAATCACAGAA 84955 || ||||| ||||| || Sbjct 3829 TGTTACCCACTCACAAAA 3846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571270929295920