Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq243 645 0.0 >seq243 Length=18593 Score = 645 bits (714), Expect = 0.0 Identities = 735/987 (74%), Gaps = 0/987 (0%) Strand=Plus/Plus Query 35971 CTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGT 36030 |||||| || |||||||| |||||||| ||||| ||||||||||||||||| || | | Sbjct 2862 CTGCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGAT 2921 Query 36031 CGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTG 36090 |||||||||| ||| ||||||||||| | || | || | |||||||| |||| Sbjct 2922 TAGCACGGTTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTG 2981 Query 36091 ACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAA 36150 | || || ||||| || || || | ||||| |||||||| || | || | ||| |||| Sbjct 2982 ATTGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAA 3041 Query 36151 GCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAA 36210 ||| || | | || ||||||||||| | |||||| |||||| || ||||||| Sbjct 3042 ACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAA 3101 Query 36211 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACG 36270 | || || ||||| || | | || || || |||||||| || || ||||| || | Sbjct 3102 AAGATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAG 3161 Query 36271 TCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCAC 36330 | ||||||| ||| |||||||| || ||| ||| |||||| |||||||||||| Sbjct 3162 TTTCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCAC 3221 Query 36331 GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 36390 |||| | || ||||| || | || ||||| |||| ||||| | ||||| |||| Sbjct 3222 GAATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATA 3281 Query 36391 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGA 36450 | || |||||||| ||||||||||| || ||||| | || || |||||||| || || | Sbjct 3282 CACCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATA 3341 Query 36451 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 36510 | | ||||||||||||||| || |||||||| | ||||||||||||||||| |||| Sbjct 3342 CGATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTT 3401 Query 36511 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 36570 |||||| || || | | |||||||||| ||||| |||||||| ||||||||||| | Sbjct 3402 GTCCAATTGGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAA 3461 Query 36571 CACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAG 36630 | |||||||| | |||||||| | || | |||||||| || |||| ||| | Sbjct 3462 CTGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATG 3521 Query 36631 CTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACC 36690 | || || | || |||||| | || || ||||| || ||||| || |||||||||| Sbjct 3522 AACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACC 3581 Query 36691 ACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATG 36750 | ||||| || | |||||||||||||||||||| || || | ||| |||||||| || | Sbjct 3582 ATTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAG 3641 Query 36751 ATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCT 36810 ||| || | || ||||| || ||||| |||||||| ||||||| ||||| || || | Sbjct 3642 TTGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTT 3701 Query 36811 CACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCA 36870 | ||||||||||| ||||| || || || ||||| | ||| || || | ||| | || Sbjct 3702 CGCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAG 3761 Query 36871 CTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGT 36930 ||||||||| | || ||||||||| || || |||||||| || ||||| | |||||| | Sbjct 3762 TTGCTGTTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTT 3821 Query 36931 TTGTACTTGTAACCCAGTCACATAAAC 36957 || ||||| ||||| ||||| |||| Sbjct 3822 CAGTGCTTGTTACCCACTCACAAAAAC 3848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150453731794396