Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq243 645 0.0
>seq243
Length=18593
Score = 645 bits (714), Expect = 0.0
Identities = 735/987 (74%), Gaps = 0/987 (0%)
Strand=Plus/Plus
Query 35971 CTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGT 36030
|||||| || |||||||| |||||||| ||||| ||||||||||||||||| || | |
Sbjct 2862 CTGCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGAT 2921
Query 36031 CGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTG 36090
|||||||||| ||| ||||||||||| | || | || | |||||||| ||||
Sbjct 2922 TAGCACGGTTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTG 2981
Query 36091 ACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAA 36150
| || || ||||| || || || | ||||| |||||||| || | || | ||| ||||
Sbjct 2982 ATTGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAA 3041
Query 36151 GCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAA 36210
||| || | | || ||||||||||| | |||||| |||||| || |||||||
Sbjct 3042 ACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAA 3101
Query 36211 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACG 36270
| || || ||||| || | | || || || |||||||| || || ||||| || |
Sbjct 3102 AAGATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAG 3161
Query 36271 TCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCAC 36330
| ||||||| ||| |||||||| || ||| ||| |||||| ||||||||||||
Sbjct 3162 TTTCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCAC 3221
Query 36331 GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 36390
|||| | || ||||| || | || ||||| |||| ||||| | ||||| ||||
Sbjct 3222 GAATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATA 3281
Query 36391 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGA 36450
| || |||||||| ||||||||||| || ||||| | || || |||||||| || || |
Sbjct 3282 CACCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATA 3341
Query 36451 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 36510
| | ||||||||||||||| || |||||||| | ||||||||||||||||| ||||
Sbjct 3342 CGATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTT 3401
Query 36511 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 36570
|||||| || || | | |||||||||| ||||| |||||||| ||||||||||| |
Sbjct 3402 GTCCAATTGGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAA 3461
Query 36571 CACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAG 36630
| |||||||| | |||||||| | || | |||||||| || |||| ||| |
Sbjct 3462 CTGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATG 3521
Query 36631 CTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACC 36690
| || || | || |||||| | || || ||||| || ||||| || ||||||||||
Sbjct 3522 AACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACC 3581
Query 36691 ACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATG 36750
| ||||| || | |||||||||||||||||||| || || | ||| |||||||| || |
Sbjct 3582 ATTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAG 3641
Query 36751 ATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCT 36810
||| || | || ||||| || ||||| |||||||| ||||||| ||||| || || |
Sbjct 3642 TTGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTT 3701
Query 36811 CACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCA 36870
| ||||||||||| ||||| || || || ||||| | ||| || || | ||| | ||
Sbjct 3702 CGCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAG 3761
Query 36871 CTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGT 36930
||||||||| | || ||||||||| || || |||||||| || ||||| | |||||| |
Sbjct 3762 TTGCTGTTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTT 3821
Query 36931 TTGTACTTGTAACCCAGTCACATAAAC 36957
|| ||||| ||||| ||||| ||||
Sbjct 3822 CAGTGCTTGTTACCCACTCACAAAAAC 3848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150453731794396
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |