Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq243 576 4e-160 >seq243 Length=18593 Score = 576 bits (638), Expect = 4e-160 Identities = 721/986 (73%), Gaps = 2/986 (0%) Strand=Plus/Plus Query 5193 CTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGT 5252 |||||| ||| |||||||| ||||| ||||| ||||| ||||| |||||||||||||| | Sbjct 2862 CTGCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGAT 2921 Query 5253 TGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTG 5312 | |||||||| | | ||| ||||||||| || | | ||| || ||||| |||| Sbjct 2922 TAGCACGGTTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTG 2981 Query 5313 ACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAA 5372 | || || ||||| || || || | ||||| |||||||| || || || | || |||| Sbjct 2982 ATTGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAA 3041 Query 5373 GCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAA 5432 ||| || | ||| || ||||||| ||| | |||||| |||||| ||| || |||| Sbjct 3042 ACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAA 3101 Query 5433 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACG 5492 | || || ||||| || | | || || || |||||||| || || ||||| || | Sbjct 3102 AAGATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAG 3161 Query 5493 TTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCAC 5552 ||||||| | ||| |||||||| || ||| ||| ||| |||||||||||| Sbjct 3162 TTTCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCAC 3221 Query 5553 GAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATA 5612 |||| | |||||||| || | |||||||| |||| || || | ||||| |||| Sbjct 3222 GAATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATA 3281 Query 5613 CCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATA 5672 | ||||||||||| ||||| ||||| || ||||| | || || |||||||| ||||||| Sbjct 3282 CACCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATA 3341 Query 5673 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCT 5732 ||| |||||| || ||||||||||| ||||| | |||||||||||| ||| || | Sbjct 3342 CGATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTT 3401 Query 5733 GTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCT 5791 |||| | || || | | ||||| | |||| ||||| ||||| ||||||||||| || Sbjct 3402 GTCCAATTGGATAAATAATGAATACAGCAGTA-GCTGCAGCAACAGGTGCTGAATAAGCA 3460 Query 5792 ACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAA 5851 || ||||| || ||||| ||||| | | || | |||||||| || |||| ||| Sbjct 3461 ACTGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTAT 3520 Query 5852 GCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGC 5911 | || || | | ||||| | |||| |||||||| ||||| ||||| || | | Sbjct 3521 GAACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAAC 3580 Query 5912 CATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAG 5971 ||||| || ||| || ||||||||||| || || || ||||| ||||||||||| || Sbjct 3581 CATTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAA 3640 Query 5972 CTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGT 6031 | ||||| || || || || || ||||| |||||||| |||| || |||| || ||| Sbjct 3641 GTTGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGT 3700 Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTA 6091 || || || || || || || ||||| || ||||| | || || | ||||| ||||| Sbjct 3701 TCGCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTA 3760 Query 6092 GTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTG 6151 ||||| ||||| | || || ||||| | ||||||||||| || ||||| | |||||| Sbjct 3761 GTTGCTGTTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTT 3820 Query 6152 TTGGTGCTAGTAACCCAGTCACAGAA 6177 | ||||| || ||||| ||||| || Sbjct 3821 TCAGTGCTTGTTACCCACTCACAAAA 3846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152648922044964