Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq243 576 4e-160
>seq243
Length=18593
Score = 576 bits (638), Expect = 4e-160
Identities = 721/986 (73%), Gaps = 2/986 (0%)
Strand=Plus/Plus
Query 5193 CTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGT 5252
|||||| ||| |||||||| ||||| ||||| ||||| ||||| |||||||||||||| |
Sbjct 2862 CTGCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGAT 2921
Query 5253 TGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTG 5312
| |||||||| | | ||| ||||||||| || | | ||| || ||||| ||||
Sbjct 2922 TAGCACGGTTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTG 2981
Query 5313 ACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAA 5372
| || || ||||| || || || | ||||| |||||||| || || || | || ||||
Sbjct 2982 ATTGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAA 3041
Query 5373 GCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAA 5432
||| || | ||| || ||||||| ||| | |||||| |||||| ||| || ||||
Sbjct 3042 ACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAA 3101
Query 5433 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACG 5492
| || || ||||| || | | || || || |||||||| || || ||||| || |
Sbjct 3102 AAGATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAG 3161
Query 5493 TTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCAC 5552
||||||| | ||| |||||||| || ||| ||| ||| ||||||||||||
Sbjct 3162 TTTCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCAC 3221
Query 5553 GAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATA 5612
|||| | |||||||| || | |||||||| |||| || || | ||||| ||||
Sbjct 3222 GAATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATA 3281
Query 5613 CCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATA 5672
| ||||||||||| ||||| ||||| || ||||| | || || |||||||| |||||||
Sbjct 3282 CACCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATA 3341
Query 5673 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCT 5732
||| |||||| || ||||||||||| ||||| | |||||||||||| ||| || |
Sbjct 3342 CGATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTT 3401
Query 5733 GTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCT 5791
|||| | || || | | ||||| | |||| ||||| ||||| ||||||||||| ||
Sbjct 3402 GTCCAATTGGATAAATAATGAATACAGCAGTA-GCTGCAGCAACAGGTGCTGAATAAGCA 3460
Query 5792 ACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAA 5851
|| ||||| || ||||| ||||| | | || | |||||||| || |||| |||
Sbjct 3461 ACTGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTAT 3520
Query 5852 GCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGC 5911
| || || | | ||||| | |||| |||||||| ||||| ||||| || | |
Sbjct 3521 GAACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAAC 3580
Query 5912 CATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAG 5971
||||| || ||| || ||||||||||| || || || ||||| ||||||||||| ||
Sbjct 3581 CATTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAA 3640
Query 5972 CTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGT 6031
| ||||| || || || || || ||||| |||||||| |||| || |||| || |||
Sbjct 3641 GTTGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGT 3700
Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTA 6091
|| || || || || || || ||||| || ||||| | || || | ||||| |||||
Sbjct 3701 TCGCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTA 3760
Query 6092 GTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTG 6151
||||| ||||| | || || ||||| | ||||||||||| || ||||| | ||||||
Sbjct 3761 GTTGCTGTTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTT 3820
Query 6152 TTGGTGCTAGTAACCCAGTCACAGAA 6177
| ||||| || ||||| ||||| ||
Sbjct 3821 TCAGTGCTTGTTACCCACTCACAAAA 3846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152648922044964
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |