Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq243 637 1e-178
>seq243
Length=18593
Score = 637 bits (706), Expect = 1e-178
Identities = 733/986 (74%), Gaps = 0/986 (0%)
Strand=Plus/Plus
Query 25452 TGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTC 25511
|||||| || || ||||| |||||||| ||||| ||||||||||||||||| || | |
Sbjct 2863 TGCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATT 2922
Query 25512 GGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGA 25571
|||||||||| ||| ||||||||||| | || | || | |||||||| |||||
Sbjct 2923 AGCACGGTTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGA 2982
Query 25572 CTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAG 25631
|| || ||||| || || || | ||||| |||||||| || | || | ||| ||||
Sbjct 2983 TTGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAA 3042
Query 25632 CCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAA 25691
||| || | | || ||||||||||| | |||||| |||||| ||| ||||||||
Sbjct 3043 CCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAA 3102
Query 25692 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGT 25751
|| || ||||| || | | || || || |||||||| || || ||||| || ||
Sbjct 3103 AGATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGT 3162
Query 25752 CTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACG 25811
||||||| ||| |||||||| || ||| ||| |||||| |||||||||||||
Sbjct 3163 TTCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACG 3222
Query 25812 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 25871
||| | || ||||| || | || ||||| |||| ||||| | ||||| |||||
Sbjct 3223 AATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATAC 3282
Query 25872 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGAC 25931
|| |||||||| ||||||||||| || ||||| | || || |||||||| || || ||
Sbjct 3283 ACCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATAC 3342
Query 25932 AAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 25991
| ||||||||||||||| || |||||||| | ||||||||||||||||| |||||
Sbjct 3343 GATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTG 3402
Query 25992 TCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTAC 26051
||||| || || | | |||||||||| ||||| |||||||| ||||||||||| ||
Sbjct 3403 TCCAATTGGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAAC 3462
Query 26052 ACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGC 26111
|||||||| | ||| |||| | || | |||||||| || |||| ||| |
Sbjct 3463 TGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGA 3522
Query 26112 TGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCA 26171
| || || | || |||||| | || |||||||| || |||||||| ||||| |||||
Sbjct 3523 ACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCA 3582
Query 26172 CTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGA 26231
||||| || | |||||||||||||||||||| || || | ||| |||||||| || |
Sbjct 3583 TTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGT 3642
Query 26232 CGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTC 26291
|| || | || || || || ||||| |||||||| ||||||| ||||| || || ||
Sbjct 3643 TGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTC 3702
Query 26292 ACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCAC 26351
||||||||||| ||||| || || || ||||| | ||| || || | ||| | ||
Sbjct 3703 GCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAGT 3762
Query 26352 TGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTT 26411
||||||||| | || ||||||||| || || |||||||| || ||||| | |||||| |
Sbjct 3763 TGCTGTTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTC 3822
Query 26412 TGTACTTGTAACCCAGTCACATAAAC 26437
|| ||||| ||||| ||||| ||||
Sbjct 3823 AGTGCTTGTTACCCACTCACAAAAAC 3848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151992924958424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |