Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq243 637 1e-178 >seq243 Length=18593 Score = 637 bits (706), Expect = 1e-178 Identities = 733/986 (74%), Gaps = 0/986 (0%) Strand=Plus/Plus Query 25452 TGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTC 25511 |||||| || || ||||| |||||||| ||||| ||||||||||||||||| || | | Sbjct 2863 TGCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATT 2922 Query 25512 GGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGA 25571 |||||||||| ||| ||||||||||| | || | || | |||||||| ||||| Sbjct 2923 AGCACGGTTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGA 2982 Query 25572 CTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAG 25631 || || ||||| || || || | ||||| |||||||| || | || | ||| |||| Sbjct 2983 TTGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAA 3042 Query 25632 CCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAA 25691 ||| || | | || ||||||||||| | |||||| |||||| ||| |||||||| Sbjct 3043 CCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAA 3102 Query 25692 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGT 25751 || || ||||| || | | || || || |||||||| || || ||||| || || Sbjct 3103 AGATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGT 3162 Query 25752 CTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACG 25811 ||||||| ||| |||||||| || ||| ||| |||||| ||||||||||||| Sbjct 3163 TTCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACG 3222 Query 25812 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 25871 ||| | || ||||| || | || ||||| |||| ||||| | ||||| ||||| Sbjct 3223 AATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATAC 3282 Query 25872 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGAC 25931 || |||||||| ||||||||||| || ||||| | || || |||||||| || || || Sbjct 3283 ACCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATAC 3342 Query 25932 AAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 25991 | ||||||||||||||| || |||||||| | ||||||||||||||||| ||||| Sbjct 3343 GATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTG 3402 Query 25992 TCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTAC 26051 ||||| || || | | |||||||||| ||||| |||||||| ||||||||||| || Sbjct 3403 TCCAATTGGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAAC 3462 Query 26052 ACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGC 26111 |||||||| | ||| |||| | || | |||||||| || |||| ||| | Sbjct 3463 TGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGA 3522 Query 26112 TGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCA 26171 | || || | || |||||| | || |||||||| || |||||||| ||||| ||||| Sbjct 3523 ACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCA 3582 Query 26172 CTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGA 26231 ||||| || | |||||||||||||||||||| || || | ||| |||||||| || | Sbjct 3583 TTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGT 3642 Query 26232 CGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTC 26291 || || | || || || || ||||| |||||||| ||||||| ||||| || || || Sbjct 3643 TGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTC 3702 Query 26292 ACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCAC 26351 ||||||||||| ||||| || || || ||||| | ||| || || | ||| | || Sbjct 3703 GCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAGT 3762 Query 26352 TGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTT 26411 ||||||||| | || ||||||||| || || |||||||| || ||||| | |||||| | Sbjct 3763 TGCTGTTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTC 3822 Query 26412 TGTACTTGTAACCCAGTCACATAAAC 26437 || ||||| ||||| ||||| |||| Sbjct 3823 AGTGCTTGTTACCCACTCACAAAAAC 3848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151992924958424