Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq133 87.8 1e-12 seq88 87.8 1e-12 seq43 86.0 5e-12 >seq133 Length=726431 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 30127 CCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGG 30186 |||| ||||| |||||| || |||| | | ||| | || || || || | ||||||| Sbjct 23491 CCCA-CCCCG-GTAGTCGGCGTGCATGCCGGCGTAGGCCGCGCCAAAGTGGCGCCACTGG 23548 Query 30187 AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAA 30246 || ||||||||||| |||||||| ||||| || | ||| | | ||| | | ||||| Sbjct 23549 AAGCCGTACACCGGACCCAGGTCGCCCTCCTCGCGGTGTCCCAGGCCGCGCGCGTCCAGG 23608 Query 30247 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 30306 || || | || |||||| |||||||||| | || || |||| ||| | | Sbjct 23609 AACTCGCGCGACCCGTTGCCGTCCCAGATGTGCACGCCGCGGTCGGCCAGCAGGCGCGCG 23668 Query 30307 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30341 || || | || ||| ||||| ||||||||||| Sbjct 23669 TTGGTCGCGCCGGAGACAAACCAGAGCAGCTCCTC 23703 >seq88 Length=544131 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 52017 GTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGTTC 52076 ||||||||| | || || | | ||| ||| ||| ||||||||||||| | || | Sbjct 449466 GTCAAGGTGCTGGTGCGGCACACACGGCGCCCCGAGCTGGGCGACAAGTTCTCCTCTCGC 449407 Query 52077 -ACGGCGCAAAAGGG-GACGTGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGACA 52134 ||||| || ||||| | || || || || || || ||| ||| | |||||| | Sbjct 449406 CACGGC-CAGAAGGGCGTGGTTGGGTGCA-TCGTGCCCGAGGCCGACCTCCCCTTCTCCG 449349 Query 52135 AGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGACCG 52194 || |||||||||||||||||| ||||| ||||| |||| ||| || ||| | ||||| | Sbjct 449348 AGCGCGGGGTGGTGCCCGACCTGATCATGAACCCGCACGGCTTCCCCTCCCGCATGACTG 449289 Query 52195 T 52195 | Sbjct 449288 T 449288 >seq43 Length=247289 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 52056 GGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTGACCCA 52114 |||||||| ||||| ||| ||||| ||| ||||| || ||| | | ||||| Sbjct 47883 GGCGACAAATTTGCTTCGCGGCACGG-GCAGAAGGGCACCATCGGCATCACCTACACCCA 47825 Query 52115 GGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGC 52174 |||||||||||||||| | ||| || | ||||||||||| ||||||||||| ||||| Sbjct 47824 GGAGGACATGCCCTTCACCGCGGAGGGCATCGTGCCCGACCTGATCATCAACCCGCACGC 47765 Query 52175 CTTTCCATCCAGGATGACC 52193 | | || || | |||||| Sbjct 47764 CATCCCGTCGCGCATGACC 47746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615737469902