Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq133 100 2e-16 >seq133 Length=726431 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| ||||| || || ||| ||| || || || ||||| || || Sbjct 170690 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 170749 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| || | |||||| |||||||| ||||| ||||| || || | || Sbjct 170750 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGG 170809 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || ||| | | | || || | |||||| Sbjct 170810 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCAC 170869 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | |||||| || || ||||||| || || || || |||||||| Sbjct 170870 TTCGAGCGTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| ||||| || || ||| ||| || || || ||||| || || Sbjct 170918 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 170977 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| || | |||||| |||||||| ||||| |||||||| |||| ||| Sbjct 170978 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGG 171037 Query 48659 AACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 171038 GATGCCCTCCTTGTC 171052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935863638802