Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq243 679 0.0
>seq243
Length=18593
Score = 679 bits (752), Expect = 0.0
Identities = 723/954 (76%), Gaps = 0/954 (0%)
Strand=Plus/Minus
Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581
||| || ||| | ||||| |||||||| ||||| | ||||||||| || | ||||
Sbjct 3823 TGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTTATGATCCCTACATTATTAACAGC 3764
Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641
| | ||| || || || || || || || || || ||||| ||||| |||||||| |
Sbjct 3763 AACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCGCCAGTAGATATTGATGGTATTCG 3704
Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701
||||| || |||||||| | || ||||| || ||||| || ||||| ||||| || ||
Sbjct 3703 CGAACCAGTATCAGGTTCATTACTATATGGAAATAACATAATTTCTGGCGCTGTAGTACC 3644
Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761
| |||||| || |||||| | || || || || ||||||||||| || ||||||| ||
Sbjct 3643 AACTTCAAACGCAATTGGTTTACATTTTTACCCAATCTGGGAAGCTGCTTCTCTTGACGA 3584
Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821
||||| |||||||||||||||| ||||||| | || | ||||| | | |||||
Sbjct 3583 ATGGTTATATAATGGTGGACCTTACCAACTTATCGTATGTCACTTTTTCTTAGGAATTTG 3524
Query 162822 AGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTG 162881
||||| |||||| | |||||| | |||| ||| |||||||||||||| ||||||
Sbjct 3523 TTCATACATGGGTCGTGAATGGGAATTATCTTTCCGTTTAGGTATGCGTCCGTGGATCGC 3464
Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941
||||| || || ||||| || ||||||| ||||| ||| | | ||||| | ||
Sbjct 3463 AGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCTGTATTCATTATTTATCCAATTGG 3404
Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001
|||||||| |||||||| | ||||| | ||||||||||||||||| || | ||| |
Sbjct 3403 ACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATTTCTGGTACTTTCAATTTTATGAT 3344
Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061
||| ||||||||||| || ||||| |||||||||| ||||||||| |||| || || ||
Sbjct 3343 CGTATTCCAAGCAGAACATAACATTTTAATGCACCCATTCCATATGCTTGGTGTTGCTGG 3284
Query 163062 TGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTAT 163121
|||||| ||||||||| | ||| ||| ||||| ||||| | || ||||||||| | ||
Sbjct 3283 TGTATTTGGTGGTTCATTATTTTCTGCAATGCATGGTTCATTAGTAACTTCTTCTTTAAT 3224
Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181
| ||||| ||||| | || || ||| ||||| || ||||||||| |||||||
Sbjct 3223 TCGTGAAACAACTGAAAACGAATCTGCTAACGTTGGTTACAAATTCGGACAACAAGAAGA 3164
Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATC 163241
||||||||||| || |||||||||||||| || ||||| || || ||||| || |||||
Sbjct 3163 AACTTACAACATCGTAGCTGCTCATGGATATTTCGGTCGTTTAATTTTCCAATACGCATC 3104
Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301
||| || ||||| ||||| | ||||||||| | ||||| | || || || | || ||
Sbjct 3103 TTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTG 3044
Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361
||| ||||| | ||| | |||||||||||||| ||| | || ||||||||||| |||||
Sbjct 3043 GTTTACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAATGGTTTCAACTTTAACCA 2984
Query 163362 ATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGC 163421
||| || ||||| || ||| || ||| |||||||| ||||| ||||| | ||
Sbjct 2983 ATCAGTAGTTGATTCACAAGGTCGTGTTATTAACACTTGGGCTGATATTATTAACCGTGC 2924
Query 163422 AGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 163475
|||||||||||||||||||| || |||||||| ||||| |||||||| ||
Sbjct 2923 TAATCTTGGTATGGAAGTTATGCATGAACGTAATGCACACAATTTCCCACTAGA 2870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 553082214328560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |