Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq243 679 0.0 >seq243 Length=18593 Score = 679 bits (752), Expect = 0.0 Identities = 723/954 (76%), Gaps = 0/954 (0%) Strand=Plus/Minus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| || ||| | ||||| |||||||| ||||| | ||||||||| || | |||| Sbjct 3823 TGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTTATGATCCCTACATTATTAACAGC 3764 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 | | ||| || || || || || || || || || ||||| ||||| |||||||| | Sbjct 3763 AACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCGCCAGTAGATATTGATGGTATTCG 3704 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 ||||| || |||||||| | || ||||| || ||||| || ||||| ||||| || || Sbjct 3703 CGAACCAGTATCAGGTTCATTACTATATGGAAATAACATAATTTCTGGCGCTGTAGTACC 3644 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 | |||||| || |||||| | || || || || ||||||||||| || ||||||| || Sbjct 3643 AACTTCAAACGCAATTGGTTTACATTTTTACCCAATCTGGGAAGCTGCTTCTCTTGACGA 3584 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 ||||| |||||||||||||||| ||||||| | || | ||||| | | ||||| Sbjct 3583 ATGGTTATATAATGGTGGACCTTACCAACTTATCGTATGTCACTTTTTCTTAGGAATTTG 3524 Query 162822 AGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTG 162881 ||||| |||||| | |||||| | |||| ||| |||||||||||||| |||||| Sbjct 3523 TTCATACATGGGTCGTGAATGGGAATTATCTTTCCGTTTAGGTATGCGTCCGTGGATCGC 3464 Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 ||||| || || ||||| || ||||||| ||||| ||| | | ||||| | || Sbjct 3463 AGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCTGTATTCATTATTTATCCAATTGG 3404 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 |||||||| |||||||| | ||||| | ||||||||||||||||| || | ||| | Sbjct 3403 ACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATTTCTGGTACTTTCAATTTTATGAT 3344 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 ||| ||||||||||| || ||||| |||||||||| ||||||||| |||| || || || Sbjct 3343 CGTATTCCAAGCAGAACATAACATTTTAATGCACCCATTCCATATGCTTGGTGTTGCTGG 3284 Query 163062 TGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTAT 163121 |||||| ||||||||| | ||| ||| ||||| ||||| | || ||||||||| | || Sbjct 3283 TGTATTTGGTGGTTCATTATTTTCTGCAATGCATGGTTCATTAGTAACTTCTTCTTTAAT 3224 Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181 | ||||| ||||| | || || ||| ||||| || ||||||||| ||||||| Sbjct 3223 TCGTGAAACAACTGAAAACGAATCTGCTAACGTTGGTTACAAATTCGGACAACAAGAAGA 3164 Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATC 163241 ||||||||||| || |||||||||||||| || ||||| || || ||||| || ||||| Sbjct 3163 AACTTACAACATCGTAGCTGCTCATGGATATTTCGGTCGTTTAATTTTCCAATACGCATC 3104 Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 ||| || ||||| ||||| | ||||||||| | ||||| | || || || | || || Sbjct 3103 TTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTG 3044 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 ||| ||||| | ||| | |||||||||||||| ||| | || ||||||||||| ||||| Sbjct 3043 GTTTACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAATGGTTTCAACTTTAACCA 2984 Query 163362 ATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGC 163421 ||| || ||||| || ||| || ||| |||||||| ||||| ||||| | || Sbjct 2983 ATCAGTAGTTGATTCACAAGGTCGTGTTATTAACACTTGGGCTGATATTATTAACCGTGC 2924 Query 163422 AGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 163475 |||||||||||||||||||| || |||||||| ||||| |||||||| || Sbjct 2923 TAATCTTGGTATGGAAGTTATGCATGAACGTAATGCACACAATTTCCCACTAGA 2870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553082214328560