Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq99 161 2e-34 seq43 118 2e-21 seq90 100 5e-16 >seq99 Length=333813 Score = 161 bits (178), Expect = 2e-34 Identities = 254/362 (70%), Gaps = 5/362 (1%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||| | |||||||||||| |||||| ||| || || ||| ||||||| |||||||| Sbjct 93414 TAGAGAAGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAG 93355 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| || || ||||||| ||||| || || | |||| | || | ||| ||||| Sbjct 93354 AAGGTCAGCCCCGGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCG 93295 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| ||||||||||| || || ||| || | ||| | ||| || || Sbjct 93294 GAGAAGAATATGCCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGC----GAATCGCTC 93239 Query 48302 TTGTCT-GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 | || |||||||| ||||||||||| ||||||||||||| ||| | |||||| Sbjct 93238 TGCGCTCGAGATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGACCACTGGTACCGTCTC 93179 Query 48361 TATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTT 48420 |||| |||| ||| | | || | | |||| | || | | |||||| Sbjct 93178 GGTGGCGTGGAACAGCATGTCCTTCTGCCGCGGGTCCTTGATGTACGCATCCAGCAGCAG 93119 Query 48421 TGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGC 48480 ||||||||| ||| | ||||| || ||||||||||| ||||||||||| | ||| Sbjct 93118 GCTGTACATCTCGCTGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGC 93059 Query 48481 CT 48482 || Sbjct 93058 CT 93057 >seq43 Length=247289 Score = 118 bits (130), Expect = 2e-21 Identities = 224/327 (69%), Gaps = 7/327 (2%) Strand=Plus/Plus Query 213907 AGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGC 213966 |||| |||||||| || ||||| ||||| | ||| ||||||||||||||| | ||||| Sbjct 177494 AGTCGAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGC 177553 Query 213967 CG---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCC 214023 || ||||||||||| | || |||||||| |||||| | ||| || | | Sbjct 177554 CGCCTCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGC 177613 Query 214024 CGTTGGACTG--TCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCAT 214081 ||||| ||| |||||||| || || || || || | ||| | | |||| ||| Sbjct 177614 CGTTG--CTGGAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCAT 177671 Query 214082 GGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCAT 214141 | || || ||||| || ||| |||| ||||| ||||| | ||| || || Sbjct 177672 GCTCAGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTA 177731 Query 214142 GATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCT 214201 |||||| | |||||||| | | | | || | ||||||| || |||||||| | Sbjct 177732 GATGCCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGCG 177791 Query 214202 GGACGAGCCAGAGTTGAAAAGCGTGGG 214228 || | ||| | |||||| |||||||| Sbjct 177792 GGGGGTGCCGGCGTTGAACAGCGTGGG 177818 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605 |||||||||||||||| |||||||||||||||||| ||||| ||| | |||| Sbjct 176628 GTGCACAGGTTGCTGCTCTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGGAGTTGCAC 176687 Query 213606 GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCA 213654 || |||||||| |||||| ||||| ||| ||||| | ||| | | ||| Sbjct 176688 GAGTCCTTGTACAGCATGAAGGGGTTCCCCGTCTCCACCTGCGCCTCCA 176736 >seq90 Length=671320 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || || | |||||||||||| |||||| ||| || || ||| ||||||| |||| ||| Sbjct 288512 TACAGGAGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAG 288453 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| || || ||||||||| | || || || ||||| Sbjct 288452 AAGGTGAGGCCGGGCATGAGGTGCCGCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCG 288393 Query 48242 GAGAAGAAGATGCCCTCCAC 48261 ||||||| |||||||||||| Sbjct 288392 GAGAAGAGGATGCCCTCCAC 288373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528445084160