Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq99 168 1e-36
seq90 123 5e-23
>seq99
Length=333813
Score = 168 bits (186), Expect = 1e-36
Identities = 260/359 (72%), Gaps = 13/359 (4%)
Strand=Plus/Plus
Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749
|||||||| |||||||| |||||||| || | ||| ||| |||| | ||| |||
Sbjct 93068 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGATGTACAGCCTGCTGCTG 93127
Query 25750 -ATGACGTACATTACAGACGTCGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACA 25807
||| ||||||| | ||| ||| | ||| || |||||| |||| ||||
Sbjct 93128 GATG-CGTACATCAAGGACC-CGCGGCAGAAGGACATGCTGTTCCACGCCACCGAGACGG 93185
Query 25808 TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCT 25866
|||| |||||| |||||| ||||| ||||||||||| ||| ||||||| |
Sbjct 93186 TACCAGTGGTCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCTCGAGCGCAGAGCGAT 93245
Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925
|| |||||| ||||| |||||||| ||| ||||||||||| || ||| ||| ||
Sbjct 93246 TCGC----CGAGCGCCTGGTCGCCTTTGCCTGC-GTGGAGGGCATATTCTTCTCCGGCTC 93300
Query 25926 GTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984
|| ||| |||||| |||| | ||| || |||| |||||| |||||| ||| ||||
Sbjct 93301 CTTCTGC-TCCATCTACTGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACCTTCTCCA 93359
Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043
||||||||||| | | || ||||| || |||| || ||||||||||| |||||| ||
Sbjct 93360 ACGAGCTCATCTCCCGCGATGAGGGCCTGCACACCGACTTTGCCTGCCTTCTCTACTCG 93418
>seq90
Length=671320
Score = 123 bits (136), Expect = 5e-23
Identities = 163/220 (74%), Gaps = 11/220 (5%)
Strand=Plus/Plus
Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG-AGCGGCT 25883
|||||| ||||||| | | ||||||| |||| | | | || ||| |||||||
Sbjct 288301 AAGGCGGAGTGGGCCCTCAGGTGGATCGGCAGCGGGTCCA----GCTTCGCGCAGCGGCT 288356
Query 25884 GGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
||| |||||||| ||| |||||||||||| | ||| ||| || ||| ||||||| ||
Sbjct 288357 GGTGGCCTTTGCCTGC-GTGGAGGGCATCCTCTTCTCCGGCTCCTTTTGTGCCATCTACT 288415
Query 25943 GGCTCAAGCAGAAGGGGAC--CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAG 26000
|||||||| || || || ||||||||| || ||| || |||||||||||| | |
Sbjct 288416 GGCTCAAGAAG--CGGCACCTCATGCCCGGCCTCACCTTCTCAAACGAGCTCATCTCCCG 288473
Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040
|| ||||| || |||| || ||||||||||| || |||
Sbjct 288474 TGATGAGGGCCTGCACACCGACTTTGCCTGCCTCCTGTAC 288513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928840457650560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |