Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq99 168 1e-36 seq90 123 5e-23 >seq99 Length=333813 Score = 168 bits (186), Expect = 1e-36 Identities = 260/359 (72%), Gaps = 13/359 (4%) Strand=Plus/Plus Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 |||||||| |||||||| |||||||| || | ||| ||| |||| | ||| ||| Sbjct 93068 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGATGTACAGCCTGCTGCTG 93127 Query 25750 -ATGACGTACATTACAGACGTCGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACA 25807 ||| ||||||| | ||| ||| | ||| || |||||| |||| |||| Sbjct 93128 GATG-CGTACATCAAGGACC-CGCGGCAGAAGGACATGCTGTTCCACGCCACCGAGACGG 93185 Query 25808 TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCT 25866 |||| |||||| |||||| ||||| ||||||||||| ||| ||||||| | Sbjct 93186 TACCAGTGGTCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCTCGAGCGCAGAGCGAT 93245 Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 || |||||| ||||| |||||||| ||| ||||||||||| || ||| ||| || Sbjct 93246 TCGC----CGAGCGCCTGGTCGCCTTTGCCTGC-GTGGAGGGCATATTCTTCTCCGGCTC 93300 Query 25926 GTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984 || ||| |||||| |||| | ||| || |||| |||||| |||||| ||| |||| Sbjct 93301 CTTCTGC-TCCATCTACTGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACCTTCTCCA 93359 Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 ||||||||||| | | || ||||| || |||| || ||||||||||| |||||| || Sbjct 93360 ACGAGCTCATCTCCCGCGATGAGGGCCTGCACACCGACTTTGCCTGCCTTCTCTACTCG 93418 >seq90 Length=671320 Score = 123 bits (136), Expect = 5e-23 Identities = 163/220 (74%), Gaps = 11/220 (5%) Strand=Plus/Plus Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG-AGCGGCT 25883 |||||| ||||||| | | ||||||| |||| | | | || ||| ||||||| Sbjct 288301 AAGGCGGAGTGGGCCCTCAGGTGGATCGGCAGCGGGTCCA----GCTTCGCGCAGCGGCT 288356 Query 25884 GGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 ||| |||||||| ||| |||||||||||| | ||| ||| || ||| ||||||| || Sbjct 288357 GGTGGCCTTTGCCTGC-GTGGAGGGCATCCTCTTCTCCGGCTCCTTTTGTGCCATCTACT 288415 Query 25943 GGCTCAAGCAGAAGGGGAC--CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAG 26000 |||||||| || || || ||||||||| || ||| || |||||||||||| | | Sbjct 288416 GGCTCAAGAAG--CGGCACCTCATGCCCGGCCTCACCTTCTCAAACGAGCTCATCTCCCG 288473 Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || ||||| || |||| || ||||||||||| || ||| Sbjct 288474 TGATGAGGGCCTGCACACCGACTTTGCCTGCCTCCTGTAC 288513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840457650560