Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_019516.1
Length=161440
Score E
Sequences producing significant alignments: (Bits) Value
seq243 646 0.0
seq260 508 6e-139
>seq243
Length=18593
Score = 646 bits (716), Expect = 0.0
Identities = 730/978 (75%), Gaps = 0/978 (0%)
Strand=Plus/Minus
Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306
|||||| || ||||| || || | || ||||| ||||| || |||||||| |||||
Sbjct 3847 TTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCT 3788
Query 8307 CATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366
|||||||| || | | | || || | | || |||| ||| || | ||||||||
Sbjct 3787 TATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728
Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426
|| || || || || || || ||||||||||| | || || | | || || || ||
Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668
Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486
||| || ||||| || || || || | || ||||||||||| | || || ||||| ||
Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608
Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546
||||||||| ||||||||||| || ||| | || || ||||| |||||||| ||| | ||
Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548
Query 8547 TTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606
| ||||| || | || | | | | || |||||||||||||||||| | |||| |||
Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488
Query 8607 CCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGC 8666
| || |||||||| |||||| ||||| || || || |||||||| || ||| ||||
Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428
Query 8667 TGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTAT 8726
||||||| || | ||||| |||| |||||||| ||||||||||||||||| | |||||
Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368
Query 8727 CTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCC 8786
|| ||||| ||||| | |||| | || ||||| || || || ||||| | ||||||||
Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308
Query 8787 CTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGG 8846
||||| |||||||||||||||||||| || || || || | ||||| |||||||||||
Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248
Query 8847 TTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGG 8906
|||| | || |||||||| | ||||||| || || |||| ||| ||| ||| |||
Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188
Query 8907 CTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGG 8966
||||| ||||| ||| |||| |||||||||||||| || || |||||||| || || ||
Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128
Query 8967 TCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGC 9026
||| || || |||||||| ||||||||||| || ||| | || || |||||| | ||
Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068
Query 9027 TGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAA 9086
||| ||||| || || || || |||||||| || | || | || || ||||| || ||
Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008
Query 9087 CCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACAC 9146
| | ||||| |||||||| ||||| || | | || |||||| || || | |||||
Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948
Query 9147 CTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGC 9206
||||| || | ||||||| || || ||||||||||| ||||| ||| | || ||
Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888
Query 9207 ACACAACTTCCCGCTTGA 9224
|||||| ||||| || ||
Sbjct 2887 ACACAATTTCCCACTAGA 2870
>seq260
Length=66046
Score = 508 bits (562), Expect = 6e-139
Identities = 730/1024 (71%), Gaps = 4/1024 (0%)
Strand=Plus/Minus
Query 9812 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCT 9871
|||||||| ||| |||||||||||||| || ||||| ||||| ||| | || |||||
Sbjct 57654 TGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGGTCA 57595
Query 9872 GGACTACTTCTTTTTCCC-ACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTAC 9930
|| ||| || || ||||| ||||| ||| | ||| | ||||| ||| | ||||| || ||
Sbjct 57594 GGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAACAAC 57536
Query 9931 GTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTT 9990
||||| | |||||| ||||| || | || | | ||| | |||||| || ||
Sbjct 57535 ATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAACTT 57476
Query 9991 CCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-T 10049
| || | ||||| || || || ||| || |||||| |||||| || || | || |
Sbjct 57475 TTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTTTAT 57417
Query 10050 GGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTT 10109
||||||| || |||| || ||||| || ||| ||| ||||| || || ||| | |
Sbjct 57416 GGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACAT 57357
Query 10110 TTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGG 10169
|||| || || ||||| || || ||||||| || |||||| | || || || || | |
Sbjct 57356 TTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAATCG 57297
Query 10170 CGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTT 10229
| | | | || ||| || || || || || || || ||||||| |||||||| ||||
Sbjct 57296 CACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGTTT 57237
Query 10230 TTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTT 10289
|||| ||| || | || || ||| | || || ||||||||||| ||||| |||||||
Sbjct 57236 TTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAGTT 57177
Query 10290 TCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGC 10349
| || || || || |||||||| || || | ||| |||| || || || || |||||
Sbjct 57176 TTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGACTT 57117
Query 10350 TCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAA 10409
| ||||| || ||||||||||| ||||||||| | || |||| ||||| || | ||||
Sbjct 57116 TGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGCAA 57057
Query 10410 TCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCA 10469
| || || | || |||||||| || || | | |||||||||| |||||||| ||
Sbjct 57056 TTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACATTTC 56997
Query 10470 AAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCT 10529
|| ||| || ||||||| |||||| || ||||| | || || || || || || |
Sbjct 56996 GTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCTTTT 56937
Query 10530 GGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGT 10589
|||| || ||||| || | || ||| |||||||| ||| | |||||||||||| | |
Sbjct 56936 GGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTAT 56877
Query 10590 TTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATC 10649
||||||| || | ||| | ||||| | || |||| | | || | || | |||
Sbjct 56876 TTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAAATT 56817
Query 10650 TTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGA 10709
| ||||| | |||||| || || ||||| || | || | ||||| || |||||||| |
Sbjct 56816 TACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTGAAA 56757
Query 10710 CGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTG 10769
| || ||||| || ||||| ||| |||| |||||| ||||||| |||||||| | |
Sbjct 56756 CTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 56697
Query 10770 ACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGT 10829
| || || || |||| || || |||||||| || ||| | || | || || || || |
Sbjct 56696 ATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCTTT 56637
Query 10830 GATA 10833
|||
Sbjct 56636 AATA 56633
Score = 86.0 bits (94), Expect = 6e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 15401 TCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAA 15460
|||||| |||||||||||||||||| ||||| ||||||| |||| | | |||||||||
Sbjct 42882 TCGGGATGTAGCGCAGTTTGGTAGCGTGCCTGTTTTGGGAACAGGGGGTCGCAGGTTCAA 42823
Query 15461 ATCCTGTATTCCCGA 15475
||||||| ||||||
Sbjct 42822 ATCCTGTCATCCCGA 42808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 516477585456000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |