Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq243 646 0.0 seq260 508 6e-139 >seq243 Length=18593 Score = 646 bits (716), Expect = 0.0 Identities = 730/978 (75%), Gaps = 0/978 (0%) Strand=Plus/Minus Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306 |||||| || ||||| || || | || ||||| ||||| || |||||||| ||||| Sbjct 3847 TTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCT 3788 Query 8307 CATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366 |||||||| || | | | || || | | || |||| ||| || | |||||||| Sbjct 3787 TATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728 Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426 || || || || || || || ||||||||||| | || || | | || || || || Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668 Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486 ||| || ||||| || || || || | || ||||||||||| | || || ||||| || Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608 Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546 ||||||||| ||||||||||| || ||| | || || ||||| |||||||| ||| | || Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548 Query 8547 TTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 | ||||| || | || | | | | || |||||||||||||||||| | |||| ||| Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488 Query 8607 CCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGC 8666 | || |||||||| |||||| ||||| || || || |||||||| || ||| |||| Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428 Query 8667 TGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTAT 8726 ||||||| || | ||||| |||| |||||||| ||||||||||||||||| | ||||| Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368 Query 8727 CTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCC 8786 || ||||| ||||| | |||| | || ||||| || || || ||||| | |||||||| Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308 Query 8787 CTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGG 8846 ||||| |||||||||||||||||||| || || || || | ||||| ||||||||||| Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248 Query 8847 TTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGG 8906 |||| | || |||||||| | ||||||| || || |||| ||| ||| ||| ||| Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188 Query 8907 CTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGG 8966 ||||| ||||| ||| |||| |||||||||||||| || || |||||||| || || || Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128 Query 8967 TCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGC 9026 ||| || || |||||||| ||||||||||| || ||| | || || |||||| | || Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068 Query 9027 TGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAA 9086 ||| ||||| || || || || |||||||| || | || | || || ||||| || || Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008 Query 9087 CCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACAC 9146 | | ||||| |||||||| ||||| || | | || |||||| || || | ||||| Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948 Query 9147 CTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGC 9206 ||||| || | ||||||| || || ||||||||||| ||||| ||| | || || Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888 Query 9207 ACACAACTTCCCGCTTGA 9224 |||||| ||||| || || Sbjct 2887 ACACAATTTCCCACTAGA 2870 >seq260 Length=66046 Score = 508 bits (562), Expect = 6e-139 Identities = 730/1024 (71%), Gaps = 4/1024 (0%) Strand=Plus/Minus Query 9812 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCT 9871 |||||||| ||| |||||||||||||| || ||||| ||||| ||| | || ||||| Sbjct 57654 TGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGGTCA 57595 Query 9872 GGACTACTTCTTTTTCCC-ACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTAC 9930 || ||| || || ||||| ||||| ||| | ||| | ||||| ||| | ||||| || || Sbjct 57594 GGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAACAAC 57536 Query 9931 GTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTT 9990 ||||| | |||||| ||||| || | || | | ||| | |||||| || || Sbjct 57535 ATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAACTT 57476 Query 9991 CCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-T 10049 | || | ||||| || || || ||| || |||||| |||||| || || | || | Sbjct 57475 TTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTTTAT 57417 Query 10050 GGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTT 10109 ||||||| || |||| || ||||| || ||| ||| ||||| || || ||| | | Sbjct 57416 GGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACAT 57357 Query 10110 TTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGG 10169 |||| || || ||||| || || ||||||| || |||||| | || || || || | | Sbjct 57356 TTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAATCG 57297 Query 10170 CGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTT 10229 | | | | || ||| || || || || || || || ||||||| |||||||| |||| Sbjct 57296 CACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGTTT 57237 Query 10230 TTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTT 10289 |||| ||| || | || || ||| | || || ||||||||||| ||||| ||||||| Sbjct 57236 TTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAGTT 57177 Query 10290 TCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGC 10349 | || || || || |||||||| || || | ||| |||| || || || || ||||| Sbjct 57176 TTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGACTT 57117 Query 10350 TCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAA 10409 | ||||| || ||||||||||| ||||||||| | || |||| ||||| || | |||| Sbjct 57116 TGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGCAA 57057 Query 10410 TCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCA 10469 | || || | || |||||||| || || | | |||||||||| |||||||| || Sbjct 57056 TTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACATTTC 56997 Query 10470 AAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCT 10529 || ||| || ||||||| |||||| || ||||| | || || || || || || | Sbjct 56996 GTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCTTTT 56937 Query 10530 GGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGT 10589 |||| || ||||| || | || ||| |||||||| ||| | |||||||||||| | | Sbjct 56936 GGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTAT 56877 Query 10590 TTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATC 10649 ||||||| || | ||| | ||||| | || |||| | | || | || | ||| Sbjct 56876 TTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAAATT 56817 Query 10650 TTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGA 10709 | ||||| | |||||| || || ||||| || | || | ||||| || |||||||| | Sbjct 56816 TACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTGAAA 56757 Query 10710 CGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTG 10769 | || ||||| || ||||| ||| |||| |||||| ||||||| |||||||| | | Sbjct 56756 CTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 56697 Query 10770 ACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGT 10829 | || || || |||| || || |||||||| || ||| | || | || || || || | Sbjct 56696 ATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCTTT 56637 Query 10830 GATA 10833 ||| Sbjct 56636 AATA 56633 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 15401 TCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAA 15460 |||||| |||||||||||||||||| ||||| ||||||| |||| | | ||||||||| Sbjct 42882 TCGGGATGTAGCGCAGTTTGGTAGCGTGCCTGTTTTGGGAACAGGGGGTCGCAGGTTCAA 42823 Query 15461 ATCCTGTATTCCCGA 15475 ||||||| |||||| Sbjct 42822 ATCCTGTCATCCCGA 42808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516477585456000