Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq243 652 0.0 seq260 560 1e-154 seq88 86.0 7e-12 seq336 84.2 2e-11 >seq243 Length=18593 Score = 652 bits (722), Expect = 0.0 Identities = 733/978 (75%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||||| | ||||| || ||||| || |||||| | |||||||||||||| || || || Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787 Query 160936 ATGATTCCCTGC-TTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| |||| | || | | || || | | ||| || || || || | | |||||| Sbjct 3786 ATGAT-CCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || || || || ||||| ||||| || | ||||| | | |||||||| || Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 ||| || ||||| ||||| | || |||| ||||| || ||| | || || ||||| || Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 ||||||||| || ||| ||||||||| | || || ||||| |||| |||||| | || Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548 Query 161175 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 161234 | ||||| | | || || | | | |||||||||||||| |||||| | |||| ||| Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488 Query 161235 TCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294 | | || |||||||| ||||| || || || || || ||||| |||||||| | ||| Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428 Query 161295 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 161354 || ||| | | ||||| | || |||||||| |||||||||| ||||| | || || Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368 Query 161355 CTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCC 161414 |||||||| ||||| | ||| | || ||||||||||| || |||||| | |||||||| Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308 Query 161415 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 161474 ||||||||||| || || || ||||| ||||| ||||| | || ||||||||| || Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248 Query 161475 TTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGG 161534 ||| | || || ||||| | |||||||||| || |||||||| || ||| ||| Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188 Query 161535 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGG 161594 |||||| ||||| ||| ||||||| || ||||||||||| ||||| || || || ||||| Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128 Query 161595 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGC 161654 |||| | |||||||||||||| || || || ||||| || || | ||||||||| | || Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068 Query 161655 TGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 161714 ||||||||| |||||||| || ||||| ||||| | || | || |||||||| || Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008 Query 161715 CCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACAC 161774 | | |||||||||||||| ||||| || | |||||| || ||| ||||| ||||| Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948 Query 161775 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGC 161834 ||||| || || | ||||||||| |||||| |||||||| ||||| || || ||||| Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888 Query 161835 TCACAACTTCCCTCTTGA 161852 ||||| ||||| || || Sbjct 2887 ACACAATTTCCCACTAGA 2870 >seq260 Length=66046 Score = 560 bits (620), Expect = 1e-154 Identities = 744/1029 (72%), Gaps = 8/1029 (1%) Strand=Plus/Minus Query 162111 GGGTGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 162170 || ||||||||| || |||| ||||||||| | || ||||| || ||| |||||||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 162171 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 162229 || || || || || ||||| ||||| ||| | || | || |||||| | ||||| || Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 162230 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAA 162289 || || || | |||||||||||| || | || | ||| ||| | |||||| || Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479 Query 162290 CTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCT 162349 |||| | |||| || |||||||| || || | |||||| |||||| | | || | Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTT 57419 Query 162350 ATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGAC 162409 ||||||||| || ||||||| || || | || |||||||||||||| || || ||||| Sbjct 57418 ATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGAC 57359 Query 162410 TTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACT 162469 ||||| || || ||||| || ||| | | || || || |||||||| || || ||| | Sbjct 57358 ATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAAT 57299 Query 162470 GGCACG---ACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGC 162526 ||||| | ||| ||||| || || || || ||||| || || | |||||||| Sbjct 57298 CGCACGTTCAGTTAAA---ATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGC 57242 Query 162527 TGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACC 162586 || || ||| ||| ||| | || || || || || ||||| ||||| || ||||| Sbjct 57241 AGTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACC 57182 Query 162587 GTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTG 162646 | || || || ||||| || ||||| || | | ||| ||||||| ||||| ||||| Sbjct 57181 GAGTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTG 57122 Query 162647 GACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTC 162706 ||| | ||||||||||| |||||||| || || ||| | || || | ||| | || | Sbjct 57121 GACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTG 57062 Query 162707 TGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACAC 162766 ||| |||||||| | ||||| |||||||| || | ||||||||||| |||||||| Sbjct 57061 TGCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACAC 57002 Query 162767 TTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCG 162826 ||| || ||| | | || || | |||||||| ||||| | || || || || || Sbjct 57001 ATTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCG 56942 Query 162827 CTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTAT 162886 ||| |||||||| || |||||| | || ||| ||| || |||||||| ||||||||||| Sbjct 56941 CTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTAT 56882 Query 162887 GCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCT 162946 | | ||||| || || | ||| | ||||| ||| || | ||| | | || | || | Sbjct 56881 GTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATT 56822 Query 162947 CAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTT 163006 ||| | ||||| | ||| || || || |||||| ||||||| || |||||||| || || Sbjct 56821 AAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATT 56762 Query 163007 TGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACC 163066 ||| || || |||||||| || |||||| |||||||||| |||| || ||| | || | Sbjct 56761 TGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGC 56702 Query 163067 AGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGC 163126 || || |||||||| || || || ||||| || ||||| || ||| | || ||||| Sbjct 56701 TCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 56642 Query 163127 TCTATGATA 163135 ||| | ||| Sbjct 56641 TCTTTAATA 56633 >seq88 Length=544131 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 158360 AGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGG 158419 |||| || || ||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 205866 AGGAGGCCGGCGTCGACCTGCCCTACTCCTGCCGTGCCGGCGCCTGCTCCTCCTGCGCGG 205807 Query 158420 GAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAA 158479 | || || | |||| ||| ||||| ||||||||||||||||||||| ||||| | Sbjct 205806 GCAAGCTGGATGCTGGGGACGTGGACCAGTCCGACCAGTCCTTCCTGGACGACGACCAGA 205747 Query 158480 TC 158481 || Sbjct 205746 TC 205745 >seq336 Length=57273 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 157684 TTTTTACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGG 157743 ||||||| | || ||||||||| |||||||| | | ||||||||||| | ||| |||||| Sbjct 54382 TTTTTACAGAGTATAGCGCAGCCTGGTAGCGTGTTCGCTTTGGGAGCGAGAGGCCGCAGG 54323 Query 157744 TTCGAATCCTG 157754 ||||||||||| Sbjct 54322 TTCGAATCCTG 54312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547744639281840