Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq243 652 0.0
seq260 560 1e-154
seq88 86.0 7e-12
seq336 84.2 2e-11
>seq243
Length=18593
Score = 652 bits (722), Expect = 0.0
Identities = 733/978 (75%), Gaps = 2/978 (0%)
Strand=Plus/Minus
Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935
|||||| | ||||| || ||||| || |||||| | |||||||||||||| || || ||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 160936 ATGATTCCCTGC-TTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCTCC 160994
||||| |||| | || | | || || | | ||| || || || || | | ||||||
Sbjct 3786 ATGAT-CCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728
Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054
|| || || || || || ||||| ||||| || | ||||| | | |||||||| ||
Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668
Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114
||| || ||||| ||||| | || |||| ||||| || ||| | || || ||||| ||
Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608
Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174
||||||||| || ||| ||||||||| | || || ||||| |||| |||||| | ||
Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548
Query 161175 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 161234
| ||||| | | || || | | | |||||||||||||| |||||| | |||| |||
Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488
Query 161235 TCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294
| | || |||||||| ||||| || || || || || ||||| |||||||| | |||
Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428
Query 161295 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 161354
|| ||| | | ||||| | || |||||||| |||||||||| ||||| | || ||
Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368
Query 161355 CTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCC 161414
|||||||| ||||| | ||| | || ||||||||||| || |||||| | ||||||||
Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308
Query 161415 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 161474
||||||||||| || || || ||||| ||||| ||||| | || ||||||||| ||
Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248
Query 161475 TTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGG 161534
||| | || || ||||| | |||||||||| || |||||||| || ||| |||
Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188
Query 161535 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGG 161594
|||||| ||||| ||| ||||||| || ||||||||||| ||||| || || || |||||
Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128
Query 161595 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGC 161654
|||| | |||||||||||||| || || || ||||| || || | ||||||||| | ||
Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068
Query 161655 TGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 161714
||||||||| |||||||| || ||||| ||||| | || | || |||||||| ||
Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008
Query 161715 CCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACAC 161774
| | |||||||||||||| ||||| || | |||||| || ||| ||||| |||||
Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948
Query 161775 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGC 161834
||||| || || | ||||||||| |||||| |||||||| ||||| || || |||||
Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888
Query 161835 TCACAACTTCCCTCTTGA 161852
||||| ||||| || ||
Sbjct 2887 ACACAATTTCCCACTAGA 2870
>seq260
Length=66046
Score = 560 bits (620), Expect = 1e-154
Identities = 744/1029 (72%), Gaps = 8/1029 (1%)
Strand=Plus/Minus
Query 162111 GGGTGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 162170
|| ||||||||| || |||| ||||||||| | || ||||| || ||| ||||||||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 162171 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 162229
|| || || || || ||||| ||||| ||| | || | || |||||| | ||||| ||
Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539
Query 162230 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAA 162289
|| || || | |||||||||||| || | || | ||| ||| | |||||| ||
Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479
Query 162290 CTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCT 162349
|||| | |||| || |||||||| || || | |||||| |||||| | | || |
Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTT 57419
Query 162350 ATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGAC 162409
||||||||| || ||||||| || || | || |||||||||||||| || || |||||
Sbjct 57418 ATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGAC 57359
Query 162410 TTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACT 162469
||||| || || ||||| || ||| | | || || || |||||||| || || ||| |
Sbjct 57358 ATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAAT 57299
Query 162470 GGCACG---ACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGC 162526
||||| | ||| ||||| || || || || ||||| || || | ||||||||
Sbjct 57298 CGCACGTTCAGTTAAA---ATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGC 57242
Query 162527 TGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACC 162586
|| || ||| ||| ||| | || || || || || ||||| ||||| || |||||
Sbjct 57241 AGTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACC 57182
Query 162587 GTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTG 162646
| || || || ||||| || ||||| || | | ||| ||||||| ||||| |||||
Sbjct 57181 GAGTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTG 57122
Query 162647 GACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTC 162706
||| | ||||||||||| |||||||| || || ||| | || || | ||| | || |
Sbjct 57121 GACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTG 57062
Query 162707 TGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACAC 162766
||| |||||||| | ||||| |||||||| || | ||||||||||| ||||||||
Sbjct 57061 TGCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACAC 57002
Query 162767 TTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCG 162826
||| || ||| | | || || | |||||||| ||||| | || || || || ||
Sbjct 57001 ATTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCG 56942
Query 162827 CTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTAT 162886
||| |||||||| || |||||| | || ||| ||| || |||||||| |||||||||||
Sbjct 56941 CTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTAT 56882
Query 162887 GCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCT 162946
| | ||||| || || | ||| | ||||| ||| || | ||| | | || | || |
Sbjct 56881 GTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATT 56822
Query 162947 CAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTT 163006
||| | ||||| | ||| || || || |||||| ||||||| || |||||||| || ||
Sbjct 56821 AAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATT 56762
Query 163007 TGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACC 163066
||| || || |||||||| || |||||| |||||||||| |||| || ||| | || |
Sbjct 56761 TGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGC 56702
Query 163067 AGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGC 163126
|| || |||||||| || || || ||||| || ||||| || ||| | || |||||
Sbjct 56701 TCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 56642
Query 163127 TCTATGATA 163135
||| | |||
Sbjct 56641 TCTTTAATA 56633
>seq88
Length=544131
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 158360 AGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGG 158419
|||| || || ||||| || ||||| |||||||| ||||| || || || || ||||
Sbjct 205866 AGGAGGCCGGCGTCGACCTGCCCTACTCCTGCCGTGCCGGCGCCTGCTCCTCCTGCGCGG 205807
Query 158420 GAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAA 158479
| || || | |||| ||| ||||| ||||||||||||||||||||| ||||| |
Sbjct 205806 GCAAGCTGGATGCTGGGGACGTGGACCAGTCCGACCAGTCCTTCCTGGACGACGACCAGA 205747
Query 158480 TC 158481
||
Sbjct 205746 TC 205745
>seq336
Length=57273
Score = 84.2 bits (92), Expect = 2e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 157684 TTTTTACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGG 157743
||||||| | || ||||||||| |||||||| | | ||||||||||| | ||| ||||||
Sbjct 54382 TTTTTACAGAGTATAGCGCAGCCTGGTAGCGTGTTCGCTTTGGGAGCGAGAGGCCGCAGG 54323
Query 157744 TTCGAATCCTG 157754
|||||||||||
Sbjct 54322 TTCGAATCCTG 54312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547744639281840
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