Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq243 563 3e-156
>seq243
Length=18593
Score = 563 bits (624), Expect = 3e-156
Identities = 718/986 (73%), Gaps = 2/986 (0%)
Strand=Plus/Plus
Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894
||||||||||| ||||| || || |||||||| || ||||||||||| | ||||| |||
Sbjct 2864 GCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2923
Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGAT 17954
|| | ||| | | |||||||| || | || | ||| | | || | |||
Sbjct 2924 GCACGGTTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGAT 2983
Query 17955 TGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 18014
||||| |||||||| ||||| | ||||| |||||||| || || || | || |||| |
Sbjct 2984 TGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAAC 3043
Query 18015 CATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAG 18074
|| || | | || ||||||||||| |||||||| |||| | | || |||||
Sbjct 3044 CAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAA 3103
Query 18075 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTC 18134
|| || ||||| || | | || || || |||||||| || || || || || ||
Sbjct 3104 GATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTT 3163
Query 18135 TCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTA 18194
||||||| ||| || ||||| || ||| ||| ||| || ||||| ||||| | |
Sbjct 3164 TCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGA 3223
Query 18195 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 18254
|| | || ||||| || | || ||||| |||| ||||| | ||||| |||||
Sbjct 3224 ATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACA 3283
Query 18255 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACG 18314
|| |||||||| ||||||||||| || ||||| | || || ||||| ||||||||||||
Sbjct 3284 CCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACG 3343
Query 18315 AACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 18374
| ||| |||||||||||||| |||||| | ||||||||||||||||| ||||||
Sbjct 3344 ATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGT 3403
Query 18375 CCAAAAGGATAAACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAAC 18433
|||| ||||||| | ||||| | || | || || || || ||||| |||||||||||
Sbjct 3404 CCAATTGGATAAATAATGAATACAGCAGTA-GCTGCAGCAACAGGTGCTGAATAAGCAAC 3462
Query 18434 ACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGC 18493
|||||||| |||||||||| | || | |||||||| || |||||||| |
Sbjct 3463 TGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGA 3522
Query 18494 TGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCA 18553
|| || | || |||||| | || || ||||| || ||||| || |||||||||||
Sbjct 3523 ACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCA 3582
Query 18554 CTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGA 18613
||||| || | |||||||||||||||||||| || || | ||| |||||||| || |
Sbjct 3583 TTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGT 3642
Query 18614 CGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTC 18673
|| || | || || || || ||||| |||||||| ||||| | ||||| || || ||
Sbjct 3643 TGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTC 3702
Query 18674 ACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGC 18733
||||||||||| || || || || |||||||| | ||| || || | ||| | ||||
Sbjct 3703 GCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAGT 3762
Query 18734 TGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTT 18793
||| ||||| | || |||||||||||| || |||||||| || || || | |||||| |
Sbjct 3763 TGCTGTTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTC 3822
Query 18794 TGTACTCGTAACCCAGTCACATAAAC 18819
|| || || ||||| ||||| ||||
Sbjct 3823 AGTGCTTGTTACCCACTCACAAAAAC 3848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151317727957156
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |