Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq243 563 3e-156 >seq243 Length=18593 Score = 563 bits (624), Expect = 3e-156 Identities = 718/986 (73%), Gaps = 2/986 (0%) Strand=Plus/Plus Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894 ||||||||||| ||||| || || |||||||| || ||||||||||| | ||||| ||| Sbjct 2864 GCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2923 Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGAT 17954 || | ||| | | |||||||| || | || | ||| | | || | ||| Sbjct 2924 GCACGGTTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGAT 2983 Query 17955 TGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 18014 ||||| |||||||| ||||| | ||||| |||||||| || || || | || |||| | Sbjct 2984 TGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAAC 3043 Query 18015 CATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAG 18074 || || | | || ||||||||||| |||||||| |||| | | || ||||| Sbjct 3044 CAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAA 3103 Query 18075 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTC 18134 || || ||||| || | | || || || |||||||| || || || || || || Sbjct 3104 GATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTT 3163 Query 18135 TCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTA 18194 ||||||| ||| || ||||| || ||| ||| ||| || ||||| ||||| | | Sbjct 3164 TCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGA 3223 Query 18195 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 18254 || | || ||||| || | || ||||| |||| ||||| | ||||| ||||| Sbjct 3224 ATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACA 3283 Query 18255 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACG 18314 || |||||||| ||||||||||| || ||||| | || || ||||| |||||||||||| Sbjct 3284 CCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACG 3343 Query 18315 AACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 18374 | ||| |||||||||||||| |||||| | ||||||||||||||||| |||||| Sbjct 3344 ATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGT 3403 Query 18375 CCAAAAGGATAAACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAAC 18433 |||| ||||||| | ||||| | || | || || || || ||||| ||||||||||| Sbjct 3404 CCAATTGGATAAATAATGAATACAGCAGTA-GCTGCAGCAACAGGTGCTGAATAAGCAAC 3462 Query 18434 ACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGC 18493 |||||||| |||||||||| | || | |||||||| || |||||||| | Sbjct 3463 TGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGA 3522 Query 18494 TGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCA 18553 || || | || |||||| | || || ||||| || ||||| || ||||||||||| Sbjct 3523 ACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCA 3582 Query 18554 CTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGA 18613 ||||| || | |||||||||||||||||||| || || | ||| |||||||| || | Sbjct 3583 TTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGT 3642 Query 18614 CGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTC 18673 || || | || || || || ||||| |||||||| ||||| | ||||| || || || Sbjct 3643 TGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTC 3702 Query 18674 ACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGC 18733 ||||||||||| || || || || |||||||| | ||| || || | ||| | |||| Sbjct 3703 GCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAGT 3762 Query 18734 TGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTT 18793 ||| ||||| | || |||||||||||| || |||||||| || || || | |||||| | Sbjct 3763 TGCTGTTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTC 3822 Query 18794 TGTACTCGTAACCCAGTCACATAAAC 18819 || || || ||||| ||||| |||| Sbjct 3823 AGTGCTTGTTACCCACTCACAAAAAC 3848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151317727957156