Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq243 580 1e-160 seq260 508 7e-139 >seq243 Length=18593 Score = 580 bits (642), Expect = 1e-160 Identities = 711/978 (73%), Gaps = 2/978 (0%) Strand=Plus/Plus Query 103181 TCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGG 103240 || || ||||| ||||| || ||||| || ||||| ||||||||||| ||| ||| ||| Sbjct 2870 TCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGG 2929 Query 103241 TTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTG 103300 || | || || ||||| ||||| | |||||||| || ||||| | || ||||| Sbjct 2930 TTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGATTGGTTA 2989 Query 103301 AAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATA 103360 |||||||| || || | ||| || ||||| || || ||| | || || ||||| ||| Sbjct 2990 AAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATA 3049 Query 103361 CCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCG 103420 || || ||||| | ||||| || || |||||| Sbjct 3050 CCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAAGATGCG 3109 Query 103421 TATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCC 103480 |||||||| || ||||||||||| || |||||||| |||||||||||||| || ||||| Sbjct 3110 TATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTTTCTTCT 3169 Query 103481 TCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACGAACCAGC 103540 | ||||||||| ||||||||| ||| |||||| ||||||| || ||||||| | Sbjct 3170 TGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGAATTAAA 3229 Query 103541 GAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCA 103600 || || || || | ||||| ||||| ||| || | ||||||||| || || |||||| Sbjct 3230 GAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACACCAGCA 3289 Query 103601 ACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATG 103660 || || ||||| ||||| |||||||| | |||||||||||| |||||||| || | ||| Sbjct 3290 ACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACGATCATA 3349 Query 103661 TAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAG 103720 | ||||| || || |||||||| || |||||| |||| ||||| |||||||| |||| Sbjct 3350 AAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGTCCAATT 3409 Query 103721 GGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATC 103780 || || | | |||||| || | || || |||||||| || || || || || |||| Sbjct 3410 GGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACTGCGATC 3469 Query 103781 CAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATG 103840 || || ||||| || | |||| | || |||||||| ||||| ||||| |||| | | || Sbjct 3470 CACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGAACAAATT 3529 Query 103841 CCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCA 103900 || | || ||||| |||| | ||||||| |||| ||||| ||||| | ||| || ||| Sbjct 3530 CCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCATTCGTCA 3589 Query 103901 AGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACA 103960 ||||| || |||||||| || || || || || | |||||||||||| || | || || Sbjct 3590 AGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTTGGTACT 3649 Query 103961 ACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATG 104020 || || ||||| || ||||| || || || | | |||||| | || ||||| ||||| Sbjct 3650 ACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCGCGAATA 3709 Query 104021 CCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGAT-GAAGCAGATGGTTGCCGC 104079 || || ||||| || || || || || | ||||| | || || ||| | ||||| | Sbjct 3710 CCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAG-TAGTTGCTGT 3768 Query 104080 CAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGTCGA 104139 || | || |||||||| || ||||| |||||||||||||| | ||||| | || Sbjct 3769 TAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCAGTGCT 3828 Query 104140 TGTAACCCACTCGCAGAA 104157 ||| |||||||| || || Sbjct 3829 TGTTACCCACTCACAAAA 3846 >seq260 Length=66046 Score = 508 bits (562), Expect = 7e-139 Identities = 730/1024 (71%), Gaps = 4/1024 (0%) Strand=Plus/Plus Query 101704 TATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGT 101763 ||| | |||||||| || | ||| || ||||| || || ||||| || |||||||| || Sbjct 56633 TATTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACTAATTTTTCATGAGGC 56692 Query 101764 TGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAG 101823 ||||| | |||| ||| ||||| | |||||||||||| || || || ||||| || Sbjct 56693 TGATCTTGAGCAGCCATCCAAGCACGAATACCTTCATTCAAAAGAATATTTTTTGTATAA 56752 Query 101824 AACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 101883 || || || || ||||| ||||| || || | || ||||| || || || || | ||| Sbjct 56753 AAAGTTTCAAATTCTGGGTCTTCAGCAGCACGAATTTCTTGTGAAACGAAATCGGATGCA 56812 Query 101884 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGA 101943 || | || | || | || | | ||| | | ||| ||||| | ||| | || || Sbjct 56813 CGTAAATTTAATGCTAAGCCTACTACACCAAAAGCACTAGTCCATAAACCAGTTACTGGT 56872 Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003 ||||| | |||||||||||| ||||| | |||||| ||| || | ||| || ||||| Sbjct 56873 ACAAATAACATAAAGAAATGTAACCAACGTTTATTAGAAAACGCTACACCGAATATTTGT 56932 Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063 ||||| || || |||||||| || | |||||||| ||||| |||| || | || || Sbjct 56933 GACCAAAAGCGATTTGCTGTTACAAAAGAATAAGTTTCTTCTGCTTGAGTTGGATTAAAC 56992 Query 102064 GCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCG 102123 || || |||||||| || ||||||||| | ||||| || || || || | || Sbjct 56993 GCACGAAATGTGTTTGCACCGTCGCCATCTTCAAATAGAGTATTTTCTACTGTTGCGCCA 57052 Query 102124 TGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGG 102183 || ||||| | || || || |||| || | ||| ||||||||||||||||| || || Sbjct 57053 TGAATTGCACAAAGAAGCGCAGCTCCTAGAACACCAGCAACACCCATCATATGAAAAGGA 57112 Query 102184 TTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACA 102243 || | |||||||| ||||| || || | ||| | | || | || || ||||||||| Sbjct 57113 TTCAAAGTCCAGTTGTGGAAACCTTGGAAGAATAAAATAAAACGGAAAATAGCTGCAACA 57172 Query 102244 CCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTG 102303 ||||| || ||||| |||||||| || || || | || || || | ||| ||| Sbjct 57173 CCAAAACTCGGTGCAAAAAACCAACTAGATTGACCTAATGGGTAAATTAAAAATACAGCA 57232 Query 102304 ACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAAC 102363 |||||||| || ||||| |||| || ||||| || || || || |||||| || | | Sbjct 57233 ACAAAAACTGCAATAGGTGCAGAAAATGCAATTGCGTTATATGGGCGAATTTTAACTGAA 57292 Query 102364 CTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCC 102423 | || | ||||||||||||||||| || ||||| | | ||| |||||||| || || Sbjct 57293 CGTGCGATTTCGAATTGACGAAGCATAAATCCAATTAAAGAAAAAGCACCGTGTAGTGCA 57352 Query 102424 ACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGA 102483 ||||| | ||| || || ||||||||| ||| | ||||| ||||||||||| ||| Sbjct 57353 ACAAATGTCCAAAGACCTCCAAGTTGGCACCAACGAGTAAAATCACCTTGAGCTTCGGGA 57412 Query 102484 CCCCA-AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGT 102542 ||||| || | || || |||||| |||||| | ||| || || || |||||| | || Sbjct 57413 CCCCATAAAAATAATAA-AGAATGCCCCATACTATTAGCGGGTGTAGAAACAGCAACAGT 57471 Query 102543 AAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGC 102602 | || || ||| || | ||| || || | || || |||||||| ||| | | Sbjct 57472 TAAAAAGTTGCAACCCTCTAAATAAGAAGTAGCTAAGCCATGAGTATACCAAGAACTTAC 57531 Query 102603 AAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGT-GGGAAAAAGAAGTA 102661 ||| || || ||||| | ||| || || | ||| | ||| ||||| ||||| || || || Sbjct 57532 AAATGTTGTTCCAGTTAACCAACCACCTAATGCTAAATATGCAGTAGGGAATAATAA-TA 57590 Query 102662 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAA 102721 | || ||||| || | ||| ||||| ||||| || || ||||||||| | ||| |||| Sbjct 57591 GACCTGACCAGCCAATAAATACAAAACGATCACGACGAAGCCAGTCATCAACGATATCAA 57650 Query 102722 ACCA 102725 |||| Sbjct 57651 ACCA 57654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633510638323920