Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq243 580 1e-160
seq260 508 7e-139
>seq243
Length=18593
Score = 580 bits (642), Expect = 1e-160
Identities = 711/978 (73%), Gaps = 2/978 (0%)
Strand=Plus/Plus
Query 103181 TCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGG 103240
|| || ||||| ||||| || ||||| || ||||| ||||||||||| ||| ||| |||
Sbjct 2870 TCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGG 2929
Query 103241 TTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTG 103300
|| | || || ||||| ||||| | |||||||| || ||||| | || |||||
Sbjct 2930 TTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGATTGGTTA 2989
Query 103301 AAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATA 103360
|||||||| || || | ||| || ||||| || || ||| | || || ||||| |||
Sbjct 2990 AAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATA 3049
Query 103361 CCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCG 103420
|| || ||||| | ||||| || || ||||||
Sbjct 3050 CCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAAGATGCG 3109
Query 103421 TATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCC 103480
|||||||| || ||||||||||| || |||||||| |||||||||||||| || |||||
Sbjct 3110 TATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTTTCTTCT 3169
Query 103481 TCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACGAACCAGC 103540
| ||||||||| ||||||||| ||| |||||| ||||||| || ||||||| |
Sbjct 3170 TGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGAATTAAA 3229
Query 103541 GAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCA 103600
|| || || || | ||||| ||||| ||| || | ||||||||| || || ||||||
Sbjct 3230 GAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACACCAGCA 3289
Query 103601 ACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATG 103660
|| || ||||| ||||| |||||||| | |||||||||||| |||||||| || | |||
Sbjct 3290 ACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACGATCATA 3349
Query 103661 TAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAG 103720
| ||||| || || |||||||| || |||||| |||| ||||| |||||||| ||||
Sbjct 3350 AAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGTCCAATT 3409
Query 103721 GGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATC 103780
|| || | | |||||| || | || || |||||||| || || || || || ||||
Sbjct 3410 GGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACTGCGATC 3469
Query 103781 CAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATG 103840
|| || ||||| || | |||| | || |||||||| ||||| ||||| |||| | | ||
Sbjct 3470 CACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGAACAAATT 3529
Query 103841 CCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCA 103900
|| | || ||||| |||| | ||||||| |||| ||||| ||||| | ||| || |||
Sbjct 3530 CCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCATTCGTCA 3589
Query 103901 AGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACA 103960
||||| || |||||||| || || || || || | |||||||||||| || | || ||
Sbjct 3590 AGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTTGGTACT 3649
Query 103961 ACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATG 104020
|| || ||||| || ||||| || || || | | |||||| | || ||||| |||||
Sbjct 3650 ACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCGCGAATA 3709
Query 104021 CCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGAT-GAAGCAGATGGTTGCCGC 104079
|| || ||||| || || || || || | ||||| | || || ||| | ||||| |
Sbjct 3710 CCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAG-TAGTTGCTGT 3768
Query 104080 CAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGTCGA 104139
|| | || |||||||| || ||||| |||||||||||||| | ||||| | ||
Sbjct 3769 TAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCAGTGCT 3828
Query 104140 TGTAACCCACTCGCAGAA 104157
||| |||||||| || ||
Sbjct 3829 TGTTACCCACTCACAAAA 3846
>seq260
Length=66046
Score = 508 bits (562), Expect = 7e-139
Identities = 730/1024 (71%), Gaps = 4/1024 (0%)
Strand=Plus/Plus
Query 101704 TATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGT 101763
||| | |||||||| || | ||| || ||||| || || ||||| || |||||||| ||
Sbjct 56633 TATTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACTAATTTTTCATGAGGC 56692
Query 101764 TGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAG 101823
||||| | |||| ||| ||||| | |||||||||||| || || || ||||| ||
Sbjct 56693 TGATCTTGAGCAGCCATCCAAGCACGAATACCTTCATTCAAAAGAATATTTTTTGTATAA 56752
Query 101824 AACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 101883
|| || || || ||||| ||||| || || | || ||||| || || || || | |||
Sbjct 56753 AAAGTTTCAAATTCTGGGTCTTCAGCAGCACGAATTTCTTGTGAAACGAAATCGGATGCA 56812
Query 101884 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGA 101943
|| | || | || | || | | ||| | | ||| ||||| | ||| | || ||
Sbjct 56813 CGTAAATTTAATGCTAAGCCTACTACACCAAAAGCACTAGTCCATAAACCAGTTACTGGT 56872
Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003
||||| | |||||||||||| ||||| | |||||| ||| || | ||| || |||||
Sbjct 56873 ACAAATAACATAAAGAAATGTAACCAACGTTTATTAGAAAACGCTACACCGAATATTTGT 56932
Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063
||||| || || |||||||| || | |||||||| ||||| |||| || | || ||
Sbjct 56933 GACCAAAAGCGATTTGCTGTTACAAAAGAATAAGTTTCTTCTGCTTGAGTTGGATTAAAC 56992
Query 102064 GCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCG 102123
|| || |||||||| || ||||||||| | ||||| || || || || | ||
Sbjct 56993 GCACGAAATGTGTTTGCACCGTCGCCATCTTCAAATAGAGTATTTTCTACTGTTGCGCCA 57052
Query 102124 TGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGG 102183
|| ||||| | || || || |||| || | ||| ||||||||||||||||| || ||
Sbjct 57053 TGAATTGCACAAAGAAGCGCAGCTCCTAGAACACCAGCAACACCCATCATATGAAAAGGA 57112
Query 102184 TTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACA 102243
|| | |||||||| ||||| || || | ||| | | || | || || |||||||||
Sbjct 57113 TTCAAAGTCCAGTTGTGGAAACCTTGGAAGAATAAAATAAAACGGAAAATAGCTGCAACA 57172
Query 102244 CCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTG 102303
||||| || ||||| |||||||| || || || | || || || | ||| |||
Sbjct 57173 CCAAAACTCGGTGCAAAAAACCAACTAGATTGACCTAATGGGTAAATTAAAAATACAGCA 57232
Query 102304 ACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAAC 102363
|||||||| || ||||| |||| || ||||| || || || || |||||| || | |
Sbjct 57233 ACAAAAACTGCAATAGGTGCAGAAAATGCAATTGCGTTATATGGGCGAATTTTAACTGAA 57292
Query 102364 CTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCC 102423
| || | ||||||||||||||||| || ||||| | | ||| |||||||| || ||
Sbjct 57293 CGTGCGATTTCGAATTGACGAAGCATAAATCCAATTAAAGAAAAAGCACCGTGTAGTGCA 57352
Query 102424 ACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGA 102483
||||| | ||| || || ||||||||| ||| | ||||| ||||||||||| |||
Sbjct 57353 ACAAATGTCCAAAGACCTCCAAGTTGGCACCAACGAGTAAAATCACCTTGAGCTTCGGGA 57412
Query 102484 CCCCA-AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGT 102542
||||| || | || || |||||| |||||| | ||| || || || |||||| | ||
Sbjct 57413 CCCCATAAAAATAATAA-AGAATGCCCCATACTATTAGCGGGTGTAGAAACAGCAACAGT 57471
Query 102543 AAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGC 102602
| || || ||| || | ||| || || | || || |||||||| ||| | |
Sbjct 57472 TAAAAAGTTGCAACCCTCTAAATAAGAAGTAGCTAAGCCATGAGTATACCAAGAACTTAC 57531
Query 102603 AAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGT-GGGAAAAAGAAGTA 102661
||| || || ||||| | ||| || || | ||| | ||| ||||| ||||| || || ||
Sbjct 57532 AAATGTTGTTCCAGTTAACCAACCACCTAATGCTAAATATGCAGTAGGGAATAATAA-TA 57590
Query 102662 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAA 102721
| || ||||| || | ||| ||||| ||||| || || ||||||||| | ||| ||||
Sbjct 57591 GACCTGACCAGCCAATAAATACAAAACGATCACGACGAAGCCAGTCATCAACGATATCAA 57650
Query 102722 ACCA 102725
||||
Sbjct 57651 ACCA 57654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633510638323920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |