Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq243 520 3e-143 >seq243 Length=18593 Score = 520 bits (576), Expect = 3e-143 Identities = 706/979 (72%), Gaps = 4/979 (0%) Strand=Plus/Plus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 || || ||||| |||||||| || || |||||||| || || | ||||| || |||||| Sbjct 2870 TCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGG 2929 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 |||| ||| |||||||| ||||| || || | || | | | | | | ||||||||| Sbjct 2930 TTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGATTGGTTA 2989 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656 |||||||||||||| ||||| || ||||| || || | || | |||| |||||||||| Sbjct 2990 AAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATA 3049 Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716 || ||||| ||||| ||||| | ||||| || | | ||| || |||||||| || Sbjct 3050 CCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAAGATGCG 3109 Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776 |||||||| || | ||||| ||||| || |||||||| || || |||||||| ||||| Sbjct 3110 TATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTTTCTTCT 3169 Query 21777 TCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGT 21836 | ||| || || ||||||||| ||| || | | |||||| || |||||||| | Sbjct 3170 TGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGAATTAAA 3229 Query 21837 GACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCC 21896 || || || || | ||| ||||| ||||| || || ||||||||||| || || Sbjct 3230 GAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACACCAGCA 3289 Query 21897 ACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATG 21956 ||||| ||||| || || || ||||| | ||| || || || || ||||| || | ||| Sbjct 3290 ACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACGATCATA 3349 Query 21957 TAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAAC 22016 | ||||| || || || || || || |||||| ||||||| || || || ||||||| Sbjct 3350 AAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGTCCAATT 3409 Query 22017 GGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATC 22076 ||||||| || ||| |||||||| || || || ||||| || || || ||||| |||| Sbjct 3410 GGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACTGCGATC 3469 Query 22077 CAGGGCCTCATCCCTAGTC-GATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGAC 22135 || || | ||| |||| | || || ||| |||||| || || |||||||| | | | | Sbjct 3470 CACGGACGCATACCTAAACGGAAAGATAA-TTCCCATTCACGACCCATGTATGAACAAAT 3528 Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195 || | || ||||| ||||| | |||||| | || || || || || | |||||| || Sbjct 3529 TCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCATTCGTC 3588 Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255 ||| | |||||||||||| |||||||| || |||| || || || || | || || Sbjct 3589 AAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTTGGTAC 3648 Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315 || || || || || ||||| || ||||| | | || || | || ||||| || || Sbjct 3649 TACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCGCGAAT 3708 Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGC-GG 22374 ||||| || || || || || || | | ||| |||||||||||| ||| || || | Sbjct 3709 ACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAGTTGCTGT 3768 Query 22375 CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTAG 22434 || | | | || |||||||| || || ||||| || ||||| | ||||| | ||| Sbjct 3769 TAATAATGTA-GGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCAGTGC 3827 Query 22435 AGGTGACCCAGGAACAAAA 22453 || ||||| |||||| Sbjct 3828 TTGTTACCCACTCACAAAA 3846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146207350653720