Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq243 520 3e-143
>seq243
Length=18593
Score = 520 bits (576), Expect = 3e-143
Identities = 706/979 (72%), Gaps = 4/979 (0%)
Strand=Plus/Plus
Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536
|| || ||||| |||||||| || || |||||||| || || | ||||| || ||||||
Sbjct 2870 TCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGG 2929
Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596
|||| ||| |||||||| ||||| || || | || | | | | | | |||||||||
Sbjct 2930 TTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGATTGGTTA 2989
Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656
|||||||||||||| ||||| || ||||| || || | || | |||| ||||||||||
Sbjct 2990 AAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATA 3049
Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716
|| ||||| ||||| ||||| | ||||| || | | ||| || |||||||| ||
Sbjct 3050 CCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAAGATGCG 3109
Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776
|||||||| || | ||||| ||||| || |||||||| || || |||||||| |||||
Sbjct 3110 TATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTTTCTTCT 3169
Query 21777 TCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGT 21836
| ||| || || ||||||||| ||| || | | |||||| || |||||||| |
Sbjct 3170 TGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGAATTAAA 3229
Query 21837 GACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCC 21896
|| || || || | ||| ||||| ||||| || || ||||||||||| || ||
Sbjct 3230 GAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACACCAGCA 3289
Query 21897 ACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATG 21956
||||| ||||| || || || ||||| | ||| || || || || ||||| || | |||
Sbjct 3290 ACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACGATCATA 3349
Query 21957 TAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAAC 22016
| ||||| || || || || || || |||||| ||||||| || || || |||||||
Sbjct 3350 AAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGTCCAATT 3409
Query 22017 GGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATC 22076
||||||| || ||| |||||||| || || || ||||| || || || ||||| ||||
Sbjct 3410 GGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACTGCGATC 3469
Query 22077 CAGGGCCTCATCCCTAGTC-GATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGAC 22135
|| || | ||| |||| | || || ||| |||||| || || |||||||| | | | |
Sbjct 3470 CACGGACGCATACCTAAACGGAAAGATAA-TTCCCATTCACGACCCATGTATGAACAAAT 3528
Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195
|| | || ||||| ||||| | |||||| | || || || || || | |||||| ||
Sbjct 3529 TCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCATTCGTC 3588
Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255
||| | |||||||||||| |||||||| || |||| || || || || | || ||
Sbjct 3589 AAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTTGGTAC 3648
Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315
|| || || || || ||||| || ||||| | | || || | || ||||| || ||
Sbjct 3649 TACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCGCGAAT 3708
Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGC-GG 22374
||||| || || || || || || | | ||| |||||||||||| ||| || || |
Sbjct 3709 ACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAGTTGCTGT 3768
Query 22375 CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTAG 22434
|| | | | || |||||||| || || ||||| || ||||| | ||||| | |||
Sbjct 3769 TAATAATGTA-GGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCAGTGC 3827
Query 22435 AGGTGACCCAGGAACAAAA 22453
|| ||||| ||||||
Sbjct 3828 TTGTTACCCACTCACAAAA 3846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146207350653720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |