Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq243 661 0.0 seq260 441 8e-119 >seq243 Length=18593 Score = 661 bits (732), Expect = 0.0 Identities = 737/984 (75%), Gaps = 0/984 (0%) Strand=Plus/Plus Query 124048 TGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTT 124107 ||||| ||||||||||| ||||||||||| | ||||||||||||||||||||| | || Sbjct 2863 TGCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATT 2922 Query 124108 TGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGA 124167 || | ||| | || |||| |||| || | | || | | |||||| ||||| Sbjct 2923 AGCACGGTTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGA 2982 Query 124168 TTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAA 124227 ||||||||||||||||||||| ||||| |||||||| || | ||||| | || || || Sbjct 2983 TTGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAA 3042 Query 124228 CCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAA 124287 ||| | || ||||| || || | |||| ||||||||| | | | ||||| || || Sbjct 3043 CCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAA 3102 Query 124288 TGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGT 124347 || || || ||||| || | |||||| || || || || || ||||| |||||||| || Sbjct 3103 AGATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGT 3162 Query 124348 TTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCT 124407 |||||||| ||||||||| || |||||| ||| || || | || |||||||| | Sbjct 3163 TTCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACG 3222 Query 124408 GATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACAT 124467 |||| |||||| || || | |||||||||||||| || ||||| || || || || | Sbjct 3223 AATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATAC 3282 Query 124468 TCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAAC 124527 || || || || ||| ||||| || ||||||| ||||||||| ||||||||||| || Sbjct 3283 ACCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATAC 3342 Query 124528 GAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTG 124587 || |||||| ||||||||||| || ||||| | |||||||||||||||||||||||| || Sbjct 3343 GATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTG 3402 Query 124588 ACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAAC 124647 |||| ||| || | | ||||||||| || |||| || ||||||||||||||||| Sbjct 3403 TCCAATTGGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAAC 3462 Query 124648 ACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGC 124707 |||||| |||||||| ||||| | | | |||| |||||| | | |||||||||| Sbjct 3463 TGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGA 3522 Query 124708 TGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCA 124767 |||| || | | ||||| | | | | || ||||| ||||||||||| ||||| Sbjct 3523 ACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCA 3582 Query 124768 TTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGA 124827 ||| |||| || || ||||||||||||||||| || |||| || || |||||||| | Sbjct 3583 TTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGT 3642 Query 124828 TGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTC 124887 ||| || || || ||||| || ||||| || ||||||| || ||||| | ||||||||| Sbjct 3643 TGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTC 3702 Query 124888 TCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAACATGCTGC 124947 | || || || ||||| || || || || || ||||| || | || ||| | | Sbjct 3703 GCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAGT 3762 Query 124948 TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTT 125007 |||||| | ||| || ||||| ||||||||||||||||||||||| | | ||| | Sbjct 3763 TGCTGTTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTC 3822 Query 125008 TGTTGATGTTACCCACTCACAGAA 125031 || ||||||||||||||| || Sbjct 3823 AGTGCTTGTTACCCACTCACAAAA 3846 >seq260 Length=66046 Score = 441 bits (488), Expect = 8e-119 Identities = 724/1044 (69%), Gaps = 21/1044 (2%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||||| || || ||||||||||| || || ||||| || || Sbjct 56635 TTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACTAATTTTTCATGAGGCTG 56694 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || |||||||| | |||||| || || ||||| || Sbjct 56695 ATCTTGAGCAGCCATCCAAGCACGAATACCTTCATTCAAAAGAATATTTTTTGTATAAAA 56754 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 ||| || || ||||||||||| || || | || ||||| || || || ||| |||| | Sbjct 56755 AGTTTCAAATTCTGGGTCTTCAGCAGCACGAATTTCTTGTGAAACGAAATCGGATGCACG 56814 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | || | ||||| ||||| | ||| | || ||||| | ||| | || || || Sbjct 56815 TAAATTTAATGCTAAGCCTACTACACCAAAAGCACTAGTCCATAAACCAGTTACTGGTAC 56874 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| |||||||| || | ||| ||||| ||||| Sbjct 56875 AAATAACATAAAGAAATGTAACCAACGTTTATTAGAAAACGCTACACCGAATATTTGTGA 56934 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | || ||||| | | | ||||||||||||| | || || |||| || || Sbjct 56935 CCAAAAGCGATTTGCTGTTACAAAAGAATAAGTTTCTTCTGCTTGAGTTGGATTAAACGC 56994 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | |||| ||| ||| | | | | || |||||| | | || Sbjct 56995 AC-GAAATGTGT---TTGCACCGTCGC--CA---------------TCTTCAAATAGAGT 57033 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | |||||||| |||||||| ||||| || | || | ||||| | || ||||| Sbjct 57034 ATTTTCTACTGTTGCGCCATGAATTGCACAAAGAAGCGCAGCTCCTAGAACACCAGCAAC 57093 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 ||||||||| ||||| |||||||| || ||||||||||||||| | |||||| ||| | Sbjct 57094 ACCCATCATATGAAAAGGATTCAAAGTCCAGTTGTGGAAACCTTGGAAGAATAAAATAAA 57153 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||| || || ||||| ||||| || ||||| || |||||||| ||||||| ||| Sbjct 57154 ACGGAAAATAGCTGCAACACCAAAACTCGGTGCAAAAAACCAACTAGATTGACCTAATGG 57213 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 || || | ||| | | || ||||| ||| ||||| ||||| | |||||| || Sbjct 57214 GTAAATTAAAAATACAGCAACAAAAACTGCAATAGGTGCAGAAAATGCAATTGCGTTATA 57273 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 || | ||| || | |||||| || ||||| | ||||| || || || | Sbjct 57274 TGGGCGAATTTTAACTGAACGTGCGATTTCGAATTGACGAAGCATAAATCCAATTAAAGA 57333 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| | || |||| ||| ||||| |||| |||||||| ||||| |||||||| || Sbjct 57334 AAAAGCACCGTGTAGTGCAACAAATGTCCAAAGACCTCCAAGTTGGCACCAACGAGTAAA 57393 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||| ||||| || ||||| | || | | | ||| ||||| | | | || Sbjct 57394 ATCACCTTGAGCTTCGGGACCCCATAAAAATAATAAAGAATGCCCCATACTATTAGCGGG 57453 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 ||| || || || | ||||| ||||| ||||| | ||| |||| || | ||||| Sbjct 57454 TGTAGAAACAGCAACAGTTAAAAAGTTGCAACCCTCTAAATAAGAAGTAGCTAAGCCATG 57513 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 |||||||| || | || || || ||||| ||||||||||| | || || ||| || Sbjct 57514 AGTATACCAAGAACTTACAAATGTTGTTCCAGTTAACCAACCACCTAATGCTAAATATGC 57573 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 | ||| | | ||| ||||| ||||| || || |||||||||||||| | | ||| Sbjct 57574 AGTAGGGAATAATAATAGACCTGACCAGCCAATAAATACAAAACGATCACGACGAAGCCA 57633 Query 123886 GTCGTCAAGAACATCAAACCAACC 123909 ||| |||| | |||||||||||| Sbjct 57634 GTCATCAACGATATCAAACCAACC 57657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578995693182480