Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq243 688 0.0
seq260 513 2e-140
>seq243
Length=18593
Score = 688 bits (762), Expect = 0.0
Identities = 742/980 (76%), Gaps = 2/980 (0%)
Strand=Plus/Plus
Query 26739 ATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACG 26798
||| | ||| ||||| || || || | ||| || || || || | |||||| ||||||
Sbjct 2869 ATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACG 2928
Query 26799 GTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATT 26858
||| | || || ||||||||||| | |||||||| |||||||||| || || || ||
Sbjct 2929 GTTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGATTGGTT 2988
Query 26859 GAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGAT 26918
||||||||||| || | || || ||||| || || | ||| | || || ||||| ||
Sbjct 2989 AAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAACCAAAT 3048
Query 26919 GCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGC 26978
|||||||| ||||| ||||| | ||||||||| || ||||| ||||| || || || ||
Sbjct 3049 ACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAAGATGC 3108
Query 26979 ATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTC 27038
|||||||| || ||||||||||| || ||||| || || ||||||||||| || |||||
Sbjct 3109 GTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTTTCTTC 3168
Query 27039 TTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAG 27098
|| ||| ||||| || |||||| ||| || || ||||||| || ||||| | |
Sbjct 3169 TTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGAATTAA 3228
Query 27099 TGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGC 27158
||||| || || | || ||||| ||||| || | || ||||| ||||| |||||
Sbjct 3229 AGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACACCAGC 3288
Query 27159 AACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCAT 27218
|||||| ||||| ||||| |||||||| | || || |||||||| |||||||| | |||
Sbjct 3289 AACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACGATCAT 3348
Query 27219 GTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAA 27278
| || ||||||||||| ||||| | |||||| |||| ||||| |||||||| || |
Sbjct 3349 AAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGTCCAAT 3408
Query 27279 AGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGAT 27338
||||| | | |||||| ||| | || ||||| || || || ||||| || || |||
Sbjct 3409 TGGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACTGCGAT 3468
Query 27339 CCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGAT 27398
||| ||||||||||||||||| | || | |||||| ||||| ||||| || | | | ||
Sbjct 3469 CCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGAACAAAT 3528
Query 27399 GCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATC 27458
|| | | ||||| | || | |||||| |||| ||||| ||||| ||||| || ||
Sbjct 3529 TCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCATTCGTC 3588
Query 27459 GAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGAC 27518
|| || || ||||||||||||||||| || || | ||| ||||| |||||| |||| ||
Sbjct 3589 AAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTTGGTAC 3648
Query 27519 AACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAAT 27578
|| || |||||||| ||||| || ||||| | | |||||| | || ||||| |||||
Sbjct 3649 TACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCGCGAAT 3708
Query 27579 ACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAAT-GAAGCAGACAGTTGCTG 27637
||| |||||||| || || || || ||||| || |||| ||| || ||| ||||||||
Sbjct 3709 ACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAG-TAGTTGCTG 3767
Query 27638 CTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGTTG 27697
||| | ||| |||||||| || ||||| |||||||||||||| || ||||| | |||
Sbjct 3768 TTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCAGTGC 3827
Query 27698 ATGTCACCCACTCACAGAAA 27717
||| ||||||||||| |||
Sbjct 3828 TTGTTACCCACTCACAAAAA 3847
>seq260
Length=66046
Score = 513 bits (568), Expect = 2e-140
Identities = 691/954 (72%), Gaps = 6/954 (1%)
Strand=Plus/Plus
Query 23459 CATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGAAGGTCTCATACGA 23518
|||||| |||| | || | ||||| | ||||||||| || || || || ||| |
Sbjct 56707 CATCCAAGCACGAATACCTTCATTCAAAAGAATATTTTTTGTATAAAAAGTTTCAAATTC 56766
Query 23519 ACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCACGAAGATTAAGAGC 23578
||||||||||||||||| ||||| || ||||| | ||||| | ||| | ||
Sbjct 56767 TGGGTCTTCAGCAGCACGAATTTCTTGTGAAACGAAATCGGATGCACGTAAATTTAATGC 56826
Query 23579 -AAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAA 23637
||||| | | | |||| || | ||| | ||| | || || ||||| |||||||
Sbjct 56827 TAAGCCTACT-ACACCAAAAGCACTAGTCCATAAACCAGTTACTGGTACAAATAACATAA 56885
Query 23638 AGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGAT 23697
|||| || |||||||| ||||| |||||| || ||||| |||||||||||||| ||||
Sbjct 56886 AGAAATGTAACCAACGTTTATTAGAAAACGCTACACCGAATATTTGTGACCAAAAGCGAT 56945
Query 23698 TTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGT 23757
||||||| || | ||||| || || || | ||||| | || ||||| ||| ||||
Sbjct 56946 TTGCTGTTACAAAAGAATAAGTTTCTTCTGCTTGAGTTGGATTAAACGCACGAAATGTGT 57005
Query 23758 TTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGA 23817
|||| || ||||||||| | || ||||| || || || | |||||||| ||| | |
Sbjct 57006 TTGCACCGTCGCCATCTTCAAATAGAGTATTTTCTACTGTTGCGCCATGAATTGCACAAA 57065
Query 23818 GAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGT 23877
|||| || |||| || | ||||||||| ||||||||||| || || || | |||||||
Sbjct 57066 GAAGCGCAGCTCCTAGAACACCAGCAACACCCATCATATGAAAAGGATTCAAAGTCCAGT 57125
Query 23878 TATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCG 23937
| || || || |||| ||| | || || | |||||| || |||||||| |||||||| |
Sbjct 57126 TGTGGAAACCTTGGAAGAATAAAATAAAACGGAAAATAGCTGCAACACCAAAACTCGGTG 57185
Query 23938 CAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAA 23997
|||| |||||| || || || || || || || | ||||||| || || || ||||
Sbjct 57186 CAAAAAACCAACTAGATTGACCTAATGGGTAAATTAAAAATACAGCAACAAAAACTGCAA 57245
Query 23998 TAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGACGTGCCAGTTCAA 24057
|||| ||||||| ||||| || || || || || ||| || | |||||| | ||| |
Sbjct 57246 TAGGTGCAGAAAATGCAATTGCGTTATATGGGCGAATTTTAACTGAACGTGCGATTTCGA 57305
Query 24058 ACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAA 24117
| ||||| | |||||| || || | | ||| |||||||| || |||||||| | |||||
Sbjct 57306 ATTGACGAAGCATAAATCCAATTAAAGAAAAAGCACCGTGTAGTGCAACAAATGTCCAAA 57365
Query 24118 GCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCA-AAGTAGA 24176
| |||||||||||| ||| || ||| || ||||||| || |||||||| || | |
Sbjct 57366 GACCTCCAAGTTGGCACCAACGAGTAAAATCACCTTGAGCTTCGGGACCCCATAAAAATA 57425
Query 24177 AGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCA 24236
| || |||||| |||||| | ||| || || || ||||| | || | |||||| |
Sbjct 57426 ATAA-AGAATGCCCCATACTATTAGCGGGTGTAGAAACAGCAACAGTTAAAAAGTTGCAA 57484
Query 24237 CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCA 24296
||||| | ||| ||| |||| | ||||| || |||||| | ||||| | ||| |||
Sbjct 57485 CCCTCTAAATAAGAAGTAGCTAAGCCATGAGTATACCAAGAACTTACAAATGTTGTTCCA 57544
Query 24297 GTAAGCCAACCGCCAATGGCAAGATAAGCAGT-GGGAAGAAGTAGGAGTCCAGACCAACC 24355
|| | |||||| || | || | ||| ||||| ||||| || || || || ||||| ||
Sbjct 57545 GTTAACCAACCACCTAATGCTAAATATGCAGTAGGGAATAA-TAATAGACCTGACCAGCC 57603
Query 24356 CACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAACCATCC 24409
| ||| ||||| ||||| || || |||||| || | ||| |||||||| ||
Sbjct 57604 AATAAATACAAAACGATCACGACGAAGCCAGTCATCAACGATATCAAACCAACC 57657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665491288813680
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