Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq243 688 0.0 seq260 513 2e-140 >seq243 Length=18593 Score = 688 bits (762), Expect = 0.0 Identities = 742/980 (76%), Gaps = 2/980 (0%) Strand=Plus/Plus Query 26739 ATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACG 26798 ||| | ||| ||||| || || || | ||| || || || || | |||||| |||||| Sbjct 2869 ATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACG 2928 Query 26799 GTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATT 26858 ||| | || || ||||||||||| | |||||||| |||||||||| || || || || Sbjct 2929 GTTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGATTGGTT 2988 Query 26859 GAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGAT 26918 ||||||||||| || | || || ||||| || || | ||| | || || ||||| || Sbjct 2989 AAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAACCAAAT 3048 Query 26919 GCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGC 26978 |||||||| ||||| ||||| | ||||||||| || ||||| ||||| || || || || Sbjct 3049 ACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAAGATGC 3108 Query 26979 ATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTC 27038 |||||||| || ||||||||||| || ||||| || || ||||||||||| || ||||| Sbjct 3109 GTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTTTCTTC 3168 Query 27039 TTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAG 27098 || ||| ||||| || |||||| ||| || || ||||||| || ||||| | | Sbjct 3169 TTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGAATTAA 3228 Query 27099 TGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGC 27158 ||||| || || | || ||||| ||||| || | || ||||| ||||| ||||| Sbjct 3229 AGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACACCAGC 3288 Query 27159 AACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCAT 27218 |||||| ||||| ||||| |||||||| | || || |||||||| |||||||| | ||| Sbjct 3289 AACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACGATCAT 3348 Query 27219 GTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAA 27278 | || ||||||||||| ||||| | |||||| |||| ||||| |||||||| || | Sbjct 3349 AAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGTCCAAT 3408 Query 27279 AGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGAT 27338 ||||| | | |||||| ||| | || ||||| || || || ||||| || || ||| Sbjct 3409 TGGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACTGCGAT 3468 Query 27339 CCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGAT 27398 ||| ||||||||||||||||| | || | |||||| ||||| ||||| || | | | || Sbjct 3469 CCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGAACAAAT 3528 Query 27399 GCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATC 27458 || | | ||||| | || | |||||| |||| ||||| ||||| ||||| || || Sbjct 3529 TCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCATTCGTC 3588 Query 27459 GAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGAC 27518 || || || ||||||||||||||||| || || | ||| ||||| |||||| |||| || Sbjct 3589 AAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTTGGTAC 3648 Query 27519 AACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAAT 27578 || || |||||||| ||||| || ||||| | | |||||| | || ||||| ||||| Sbjct 3649 TACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCGCGAAT 3708 Query 27579 ACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAAT-GAAGCAGACAGTTGCTG 27637 ||| |||||||| || || || || ||||| || |||| ||| || ||| |||||||| Sbjct 3709 ACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAG-TAGTTGCTG 3767 Query 27638 CTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGTTG 27697 ||| | ||| |||||||| || ||||| |||||||||||||| || ||||| | ||| Sbjct 3768 TTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCAGTGC 3827 Query 27698 ATGTCACCCACTCACAGAAA 27717 ||| ||||||||||| ||| Sbjct 3828 TTGTTACCCACTCACAAAAA 3847 >seq260 Length=66046 Score = 513 bits (568), Expect = 2e-140 Identities = 691/954 (72%), Gaps = 6/954 (1%) Strand=Plus/Plus Query 23459 CATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGAAGGTCTCATACGA 23518 |||||| |||| | || | ||||| | ||||||||| || || || || ||| | Sbjct 56707 CATCCAAGCACGAATACCTTCATTCAAAAGAATATTTTTTGTATAAAAAGTTTCAAATTC 56766 Query 23519 ACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCACGAAGATTAAGAGC 23578 ||||||||||||||||| ||||| || ||||| | ||||| | ||| | || Sbjct 56767 TGGGTCTTCAGCAGCACGAATTTCTTGTGAAACGAAATCGGATGCACGTAAATTTAATGC 56826 Query 23579 -AAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAA 23637 ||||| | | | |||| || | ||| | ||| | || || ||||| ||||||| Sbjct 56827 TAAGCCTACT-ACACCAAAAGCACTAGTCCATAAACCAGTTACTGGTACAAATAACATAA 56885 Query 23638 AGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGAT 23697 |||| || |||||||| ||||| |||||| || ||||| |||||||||||||| |||| Sbjct 56886 AGAAATGTAACCAACGTTTATTAGAAAACGCTACACCGAATATTTGTGACCAAAAGCGAT 56945 Query 23698 TTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGT 23757 ||||||| || | ||||| || || || | ||||| | || ||||| ||| |||| Sbjct 56946 TTGCTGTTACAAAAGAATAAGTTTCTTCTGCTTGAGTTGGATTAAACGCACGAAATGTGT 57005 Query 23758 TTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGA 23817 |||| || ||||||||| | || ||||| || || || | |||||||| ||| | | Sbjct 57006 TTGCACCGTCGCCATCTTCAAATAGAGTATTTTCTACTGTTGCGCCATGAATTGCACAAA 57065 Query 23818 GAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGT 23877 |||| || |||| || | ||||||||| ||||||||||| || || || | ||||||| Sbjct 57066 GAAGCGCAGCTCCTAGAACACCAGCAACACCCATCATATGAAAAGGATTCAAAGTCCAGT 57125 Query 23878 TATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCG 23937 | || || || |||| ||| | || || | |||||| || |||||||| |||||||| | Sbjct 57126 TGTGGAAACCTTGGAAGAATAAAATAAAACGGAAAATAGCTGCAACACCAAAACTCGGTG 57185 Query 23938 CAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAA 23997 |||| |||||| || || || || || || || | ||||||| || || || |||| Sbjct 57186 CAAAAAACCAACTAGATTGACCTAATGGGTAAATTAAAAATACAGCAACAAAAACTGCAA 57245 Query 23998 TAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGACGTGCCAGTTCAA 24057 |||| ||||||| ||||| || || || || || ||| || | |||||| | ||| | Sbjct 57246 TAGGTGCAGAAAATGCAATTGCGTTATATGGGCGAATTTTAACTGAACGTGCGATTTCGA 57305 Query 24058 ACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAA 24117 | ||||| | |||||| || || | | ||| |||||||| || |||||||| | ||||| Sbjct 57306 ATTGACGAAGCATAAATCCAATTAAAGAAAAAGCACCGTGTAGTGCAACAAATGTCCAAA 57365 Query 24118 GCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCA-AAGTAGA 24176 | |||||||||||| ||| || ||| || ||||||| || |||||||| || | | Sbjct 57366 GACCTCCAAGTTGGCACCAACGAGTAAAATCACCTTGAGCTTCGGGACCCCATAAAAATA 57425 Query 24177 AGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCA 24236 | || |||||| |||||| | ||| || || || ||||| | || | |||||| | Sbjct 57426 ATAA-AGAATGCCCCATACTATTAGCGGGTGTAGAAACAGCAACAGTTAAAAAGTTGCAA 57484 Query 24237 CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCA 24296 ||||| | ||| ||| |||| | ||||| || |||||| | ||||| | ||| ||| Sbjct 57485 CCCTCTAAATAAGAAGTAGCTAAGCCATGAGTATACCAAGAACTTACAAATGTTGTTCCA 57544 Query 24297 GTAAGCCAACCGCCAATGGCAAGATAAGCAGT-GGGAAGAAGTAGGAGTCCAGACCAACC 24355 || | |||||| || | || | ||| ||||| ||||| || || || || ||||| || Sbjct 57545 GTTAACCAACCACCTAATGCTAAATATGCAGTAGGGAATAA-TAATAGACCTGACCAGCC 57603 Query 24356 CACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAACCATCC 24409 | ||| ||||| ||||| || || |||||| || | ||| |||||||| || Sbjct 57604 AATAAATACAAAACGATCACGACGAAGCCAGTCATCAACGATATCAAACCAACC 57657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665491288813680