Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq243 650 0.0
>seq243
Length=18593
Score = 650 bits (720), Expect = 0.0
Identities = 737/986 (75%), Gaps = 4/986 (0%)
Strand=Plus/Plus
Query 7890 TGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTT 7949
|||||| |||| |||||| ||||||||||| | ||||||||||||||||||||| | ||
Sbjct 2863 TGCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATT 2922
Query 7950 TGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACT 8007
|| | ||| ||||| ||| |||| || ||| | ||| | |||||| |||
Sbjct 2923 AGCACGGTTAATAATA--TCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACT 2980
Query 8008 GATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTT 8067
|||||||||||||| || || || | |||||||||||| || ||||||| | || |||
Sbjct 2981 GATTGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTA 3040
Query 8068 AACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTA 8127
||||||| || |||||||| | | ||| | ||||||||| | | | | ||| |||
Sbjct 3041 AACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTA 3100
Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187
|| ||||| || ||||| ||||| | ||| || |||||||||||||| || || || ||
Sbjct 3101 AAAGATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAA 3160
Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247
|| ||||||| ||| || || || |||||| ||| ||| || | ||||||||| ||
Sbjct 3161 GTTTCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCA 3220
Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307
| |||| |||||| || ||||| ||||| ||||| ||| || | ||| ||||| ||
Sbjct 3221 CGAATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAAT 3280
Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367
| ||| || || || ||||||||| || ||||| | ||||||||| ||||||||||||
Sbjct 3281 ACACCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAAT 3340
Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427
|||| ||| || || || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 3341 ACGATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCT 3400
Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487
|| |||| |||||| | | ||| || || ||| |||| || || || ||| ||
Sbjct 3401 TGTCCAATTGGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCA 3460
Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAA 8547
|| |||||| || | ||||||||| ||| | ||||| ||||| | | |||||||||
Sbjct 3461 ACTGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTAT 3520
Query 8548 GCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAAC 8607
| | ||||||| | | ||||| | | | | || || || || || ||||| |||
Sbjct 3521 GAACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAAC 3580
Query 8608 CACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAA 8667
|| || || | | ||||||||||| || || || || ||||| ||||| ||||| |||
Sbjct 3581 CATTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAA 3640
Query 8668 GATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGT 8727
| ||| || ||||| ||||| || ||||| |||||||| | |||||||||| || |||
Sbjct 3641 GTTGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGT 3700
Query 8728 TCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTA 8787
|| |||||||| || ||||| || || |||||||| ||||| || | ||||| ||||
Sbjct 3701 TCGCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTA 3760
Query 8788 GCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTG 8847
| || | ||| || ||| ||||| ||||| ||||||||||| ||||| | | |||
Sbjct 3761 GTTGCTGTTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTT 3820
Query 8848 TTTGTACTTGTAACCCACTCGCAAAA 8873
| || ||||| |||||||| |||||
Sbjct 3821 TCAGTGCTTGTTACCCACTCACAAAA 3846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 615859520843280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |