Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq243 650 0.0 >seq243 Length=18593 Score = 650 bits (720), Expect = 0.0 Identities = 737/986 (75%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 7890 TGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTT 7949 |||||| |||| |||||| ||||||||||| | ||||||||||||||||||||| | || Sbjct 2863 TGCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATT 2922 Query 7950 TGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACT 8007 || | ||| ||||| ||| |||| || ||| | ||| | |||||| ||| Sbjct 2923 AGCACGGTTAATAATA--TCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACT 2980 Query 8008 GATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTT 8067 |||||||||||||| || || || | |||||||||||| || ||||||| | || ||| Sbjct 2981 GATTGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTA 3040 Query 8068 AACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTA 8127 ||||||| || |||||||| | | ||| | ||||||||| | | | | ||| ||| Sbjct 3041 AACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTA 3100 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187 || ||||| || ||||| ||||| | ||| || |||||||||||||| || || || || Sbjct 3101 AAAGATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAA 3160 Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247 || ||||||| ||| || || || |||||| ||| ||| || | ||||||||| || Sbjct 3161 GTTTCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCA 3220 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 | |||| |||||| || ||||| ||||| ||||| ||| || | ||| ||||| || Sbjct 3221 CGAATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAAT 3280 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| || || || ||||||||| || ||||| | ||||||||| |||||||||||| Sbjct 3281 ACACCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAAT 3340 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 |||| ||| || || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 3341 ACGATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCT 3400 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 || |||| |||||| | | ||| || || ||| |||| || || || ||| || Sbjct 3401 TGTCCAATTGGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCA 3460 Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAA 8547 || |||||| || | ||||||||| ||| | ||||| ||||| | | ||||||||| Sbjct 3461 ACTGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTAT 3520 Query 8548 GCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAAC 8607 | | ||||||| | | ||||| | | | | || || || || || ||||| ||| Sbjct 3521 GAACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAAC 3580 Query 8608 CACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAA 8667 || || || | | ||||||||||| || || || || ||||| ||||| ||||| ||| Sbjct 3581 CATTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAA 3640 Query 8668 GATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGT 8727 | ||| || ||||| ||||| || ||||| |||||||| | |||||||||| || ||| Sbjct 3641 GTTGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGT 3700 Query 8728 TCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTA 8787 || |||||||| || ||||| || || |||||||| ||||| || | ||||| |||| Sbjct 3701 TCGCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTA 3760 Query 8788 GCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTG 8847 | || | ||| || ||| ||||| ||||| ||||||||||| ||||| | | ||| Sbjct 3761 GTTGCTGTTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTT 3820 Query 8848 TTTGTACTTGTAACCCACTCGCAAAA 8873 | || ||||| |||||||| ||||| Sbjct 3821 TCAGTGCTTGTTACCCACTCACAAAA 3846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615859520843280