Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq243 697 0.0 seq260 554 5e-153 >seq243 Length=18593 Score = 697 bits (772), Expect = 0.0 Identities = 743/978 (76%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 165769 TTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTG 165828 || || || ||||| || ||||| | ||||| | ||||| |||||||||||| || Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787 Query 165829 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTC-ATCGTCGCCTTCATCGCTGCTCC 165887 ||||| || || | || ||||||||| ||| || || |||| || ||||||||||| Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || || || || || || || ||||| || | ||||| | | ||||| || || Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 ||| || ||||| || || || || |||| |||||||||||| |||| || || || || Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 ||||||||| || || |||||||||||| | ||||| ||||| |||| |||||| | || Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 | ||||| | | || || | | | |||||||||||||| |||||| | |||| ||| Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488 Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187 | ||||||||||||| |||||| |||||||| |||||||| || ||||| || | ||| Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428 Query 166188 AGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 166247 |||||| | | ||||| | || |||||| |||||||||| |||||| | || || Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368 Query 166248 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 166307 || || || ||||| | ||| | || |||||||| || || || ||| | ||||| || Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308 Query 166308 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 166367 ||||||||||| || |||||||| ||||||||||| || ||| ||| ||||| || Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248 Query 166368 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 166427 || || ||||||||| | || | || || ||||||| |||||| ||| || Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188 Query 166428 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 166487 |||||| ||||||||| |||||||||| |||||||||||||| |||||||| || ||||| Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128 Query 166488 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 166547 |||||| || ||||||||||| || || || ||||| || || || ||||||||| | || Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068 Query 166548 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 166607 ||| ||||| ||||| || || ||||| || || | || | || || |||||||| || Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008 Query 166608 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 166667 | | || ||||||||||| ||||| || | ||||| || |||||||| | ||||| Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948 Query 166668 CTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGC 166727 ||||| ||| || ||||||| ||| ||| |||||||||||||||||||| ||||| || Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888 Query 166728 ACACAACTTCCCCCTCGA 166745 |||||| ||||| || || Sbjct 2887 ACACAATTTCCCACTAGA 2870 >seq260 Length=66046 Score = 554 bits (614), Expect = 5e-153 Identities = 739/1024 (72%), Gaps = 2/1024 (0%) Strand=Plus/Minus Query 167008 GGGTGGTTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGG 167067 || ||||||||| || | |||||||||||| | ||||||||||| ||| |||||||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 167068 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGAC 167126 || || || || || ||||| ||||| ||| | || | || |||||| | ||||| || Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 167127 TACTTTCGTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAA 167186 || || || | ||||||||||||||| | || | |||| | |||||| || Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479 Query 167187 CTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCT 167246 |||| | |||| || ||| ||| || || || |||||| ||||||||| | || | Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTT 57419 Query 167247 ATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGC 167306 ||||||||| ||| ||||||| ||||| | ||| ||||||||| || || ||| | Sbjct 57418 ATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGAC 57359 Query 167307 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACT 167366 ||||| || || ||||| || ||| || | ||||| || |||||||| || || ||| | Sbjct 57358 ATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAAT 57299 Query 167367 TGCTCGCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGT 167426 || || || || || || || || || ||||| || |||| |||||||| || Sbjct 57298 CGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGT 57239 Query 167427 CTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTC 167486 || ||| || || | | || || | |||||| || ||||| ||||| ||| Sbjct 57238 TTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAG 57179 Query 167487 CTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGAC 167546 || || || || || || ||||| || | | ||| ||||||| |||||||||||||| Sbjct 57178 TTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGAC 57119 Query 167547 ACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGC 167606 ||||||| ||||||||||||||||| || ||| | || || | ||| | |||| ||| Sbjct 57118 TTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGC 57059 Query 167607 AATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTT 167666 ||| ||||| | |||||||| |||||| | | ||||||||| || |||||||| || Sbjct 57058 AATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACATT 56999 Query 167667 TAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATT 167726 | || || || | ||||| | |||||| |||||||| | || |||||||| || || Sbjct 56998 TCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCTT 56939 Query 167727 CTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTT 167786 ||||| || || ||||| | || || || ||||| ||| | |||||||||||||| Sbjct 56938 TTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 56879 Query 167787 ATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAA 167846 ||| || || || | || | ||||| | |||| | | || | || | || Sbjct 56878 ATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAAA 56819 Query 167847 TCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGA 167906 | | ||||| | |||||||||||| ||||| || | || || || || ||||| ||||| Sbjct 56818 TTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTGA 56759 Query 167907 AACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTAT 167966 |||||| ||||| ||||| || ||| ||||||||||| |||| || ||| | || || Sbjct 56758 AACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 56699 Query 167967 CGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACT 168026 ||||| |||||||| || || || ||||||||||| ||| | ||||| || ||||| || Sbjct 56698 AGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCT 56639 Query 168027 ATAA 168030 ||| Sbjct 56638 TTAA 56635 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 |||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||| | Sbjct 21964 TCCTCAGTAGCTCAGCGGTAGAGCGATCGGCTGTTAACCGATTGGTCGTAGGTTCAATCC 22023 Query 18189 CTACCTGGGGAG 18200 |||||||||||| Sbjct 22024 CTACCTGGGGAG 22035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561245376165600