Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq133 176 6e-39 seq149 105 9e-18 >seq133 Length=726431 Score = 176 bits (194), Expect = 6e-39 Identities = 302/435 (69%), Gaps = 4/435 (1%) Strand=Plus/Minus Query 196445 AACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCG 196504 || || || || || ||||| || || || ||| | |||||||| || || || ||| Sbjct 640284 AAGGTGCAGGACCTGCTGCTCCTGGACGTCATCCCCCTCTCCCTGGGCCTGGAGACCGCG 640225 Query 196505 GGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAA 196564 || || || ||||| | | || | | ||||| || || || || |||||||| || Sbjct 640224 GGCGGCGTGATGACGACGCTGATCGCGCGCAACACCACCATCCCCACCAAGAAGGAGCAG 640165 Query 196565 GTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAA 196624 || || || || || ||||| || || || || || | ||||| || || || || || Sbjct 640164 GTGTTCTCCACCTACTCCGACAACCAGCCCGGCGTGCTGATTCAGGTGTACGAGGGTGAG 640105 Query 196625 CGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCT 196684 ||| | || | ||||| ||| | || || || | ||||| ||||||| || || | Sbjct 640104 CGCACGCGCACCAAGGACAACAACCTGCTGGGCAAGTTCGAGCTGACGGGCATCCCTCCC 640045 Query 196685 GCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTA 196744 || || | || || || ||||| | || ||| || | ||||| || || || || Sbjct 640044 GCGCCGCGCGGCGTGCCCCAGATCACCGTCACCTTTGACGTGGACGCCAACGGCATCCTG 639985 Query 196745 AACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCT-GAA-AAGATTGTGATTACCAATG 196802 ||||||| || ||||||||| | | || | || ||| ||||| || ||||| | Sbjct 639984 AACGTCAGTGCGGAGGACAAGACGACGGGGA--TCAAGAACAAGATCACCATCACCAACG 639927 Query 196803 ACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACA 196862 |||||||||| || || |||||||| || || || ||||| || || ||||| ||||||| Sbjct 639926 ACAAGGGGCGCCTGTCCAAGGAGGAGATCGAGCGCATGGTGCAGGAGGCGGAGAAGTACA 639867 Query 196863 GGGAAGAAGACGAGG 196877 || || ||||||| Sbjct 639866 AGGGCGAGGACGAGG 639852 Score = 165 bits (182), Expect = 1e-35 Identities = 524/806 (65%), Gaps = 20/806 (2%) Strand=Plus/Minus Query 195626 TTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCT 195685 ||||| ||||| || || || || |||||| || | |||||||||||| || | || Sbjct 641268 TTTGCCCCCGAGGAGATCTCCTCCATGGTGCTGGTGAAGATGAAGGAGGTGGCCCAGTCC 641209 Query 195686 TTCATGGGT------AAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGT 195739 || |||| || ||||| | || || || || || || || ||||||| Sbjct 641208 TTTGTGGGCGCCGACAAGGAGGTGAAGAAGGCGGTGGTCACCGTGCCCGCCTACTTCAAC 641149 Query 195740 GATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTA-G 195798 || || || || |||||||| |||||||| | | |||||||| || || ||| | | Sbjct 641148 GACTCCCAGCGCCAGGCGACCAAGGACGCCGGCGTGATTGCGGGCCTGGAC-GTCATGCG 641090 Query 195799 AATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA------CAA 195852 || ||||| || || || || || || || || || || ||||||||||| || Sbjct 641089 TATCATCAACGAGCCCACCGCCGCCGCCATCGCGTACGGCCTGGACAAGAAGCACGCCAC 641030 Query 195853 GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACT 195912 || || | || || | |||||||| || || || || || |||||||| || || Sbjct 641029 CACCGGCGAGCAGAACGTGCTCATCTTTGACCTGGGCGGCGGCACCTTTGATGTGTCCCT 640970 Query 195913 TCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGG 195972 || | || || | || || ||||| || ||||| || || || || || || || || Sbjct 640969 GCTGACGATCGAGGAGGGCATCTTCGAGGTGAAGGCCACCGCGGGCGACACCCACCTGGG 640910 Query 195973 TGGTGAAGATTTCGATGCACGTCTTCTCCG-TCATTTGTCTGATGAGTTCCGTCGAAAGA 196031 || || || || || || || || | | || ||| | |||||| || |||| Sbjct 640909 CGGCGAGGACTTTGACAACCGCCTGGTCAGCTTCTTCGTC-CAGGAGTTCAAGCGCAAGA 640851 Query 196032 ATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAAC 196091 | ||||| || || || || || | || || || || || | ||||| || || | Sbjct 640850 ACAAGAAGGACATCAGCGGCAACCCGCGCGCGCTGCGCCGCCTGCGCACTGCCTGCGAGC 640791 Query 196092 GTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTG 196151 | ||||| || ||||| || | | || | | ||||| || || ||| | Sbjct 640790 GCGCCAAGCGCCAGCTCTCCTCCTCCACCCAGGCCTCCATCGAGATCGACTCCCTGTACG 640731 Query 196152 ACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATT 196211 | || || |||||||| | | || ||||| || || || || ||| | ||| || Sbjct 640730 AGGGCATCGACTTCTACTCCGCCATCACCCGCGCCCGCTTCGAGGAGCTGAACATGGACC 640671 Query 196212 TGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGT 196271 |||| | ||||| ||||| || || || | || | || ||||| |||||||| ||| Sbjct 640670 TGTTCCGCAAGTGCATGGACCCGGTGGAGAAGGTCATCCGCGACGCCAAGATGGACAAGG 640611 Query 196272 CTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGA 196331 || | | || | || || || || || || |||||||| || ||| | || Sbjct 640610 GCCAGATCCACGAGGTGGTGCTGGTCGGCGGCTCCACCCGTATCCCCAAGGTCCAGACCC 640551 Query 196332 TGCTTTCTAG--CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGC 196389 ||| || || ||| ||||| || || | ||| | |||||||| || || || Sbjct 640550 TGC--TCCAGGACTTTTTCAACGGCAAGGAGCTGTGCAAGAGCATCAACCCCGACGAGGC 640493 Query 196390 AGTTGCTTATGGTGCGGCCGTTCAGG 196415 || || || || || ||||| |||| Sbjct 640492 CGTCGCCTACGGCGCCGCCGTCCAGG 640467 >seq149 Length=203194 Score = 105 bits (116), Expect = 9e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990 || ||| | || ||||||||||| |||||||| || || || || || || || || || Sbjct 7006 GACAACGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCGGACCAACAGCGCCTG 6947 Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAG 172050 || ||||| || || ||||| || ||||| || ||||| | || |||||| | || ||| Sbjct 6946 ATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 6887 Query 172051 GAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| || || ||||| || || | || || ||||| Sbjct 6886 GAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 6849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657859324493280