Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq133 176 6e-39
seq149 105 9e-18
>seq133
Length=726431
Score = 176 bits (194), Expect = 6e-39
Identities = 302/435 (69%), Gaps = 4/435 (1%)
Strand=Plus/Minus
Query 196445 AACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCG 196504
|| || || || || ||||| || || || ||| | |||||||| || || || |||
Sbjct 640284 AAGGTGCAGGACCTGCTGCTCCTGGACGTCATCCCCCTCTCCCTGGGCCTGGAGACCGCG 640225
Query 196505 GGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAA 196564
|| || || ||||| | | || | | ||||| || || || || |||||||| ||
Sbjct 640224 GGCGGCGTGATGACGACGCTGATCGCGCGCAACACCACCATCCCCACCAAGAAGGAGCAG 640165
Query 196565 GTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAA 196624
|| || || || || ||||| || || || || || | ||||| || || || || ||
Sbjct 640164 GTGTTCTCCACCTACTCCGACAACCAGCCCGGCGTGCTGATTCAGGTGTACGAGGGTGAG 640105
Query 196625 CGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCT 196684
||| | || | ||||| ||| | || || || | ||||| ||||||| || || |
Sbjct 640104 CGCACGCGCACCAAGGACAACAACCTGCTGGGCAAGTTCGAGCTGACGGGCATCCCTCCC 640045
Query 196685 GCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTA 196744
|| || | || || || ||||| | || ||| || | ||||| || || || ||
Sbjct 640044 GCGCCGCGCGGCGTGCCCCAGATCACCGTCACCTTTGACGTGGACGCCAACGGCATCCTG 639985
Query 196745 AACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCT-GAA-AAGATTGTGATTACCAATG 196802
||||||| || ||||||||| | | || | || ||| ||||| || ||||| |
Sbjct 639984 AACGTCAGTGCGGAGGACAAGACGACGGGGA--TCAAGAACAAGATCACCATCACCAACG 639927
Query 196803 ACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACA 196862
|||||||||| || || |||||||| || || || ||||| || || ||||| |||||||
Sbjct 639926 ACAAGGGGCGCCTGTCCAAGGAGGAGATCGAGCGCATGGTGCAGGAGGCGGAGAAGTACA 639867
Query 196863 GGGAAGAAGACGAGG 196877
|| || |||||||
Sbjct 639866 AGGGCGAGGACGAGG 639852
Score = 165 bits (182), Expect = 1e-35
Identities = 524/806 (65%), Gaps = 20/806 (2%)
Strand=Plus/Minus
Query 195626 TTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCT 195685
||||| ||||| || || || || |||||| || | |||||||||||| || | ||
Sbjct 641268 TTTGCCCCCGAGGAGATCTCCTCCATGGTGCTGGTGAAGATGAAGGAGGTGGCCCAGTCC 641209
Query 195686 TTCATGGGT------AAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGT 195739
|| |||| || ||||| | || || || || || || || |||||||
Sbjct 641208 TTTGTGGGCGCCGACAAGGAGGTGAAGAAGGCGGTGGTCACCGTGCCCGCCTACTTCAAC 641149
Query 195740 GATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTA-G 195798
|| || || || |||||||| |||||||| | | |||||||| || || ||| | |
Sbjct 641148 GACTCCCAGCGCCAGGCGACCAAGGACGCCGGCGTGATTGCGGGCCTGGAC-GTCATGCG 641090
Query 195799 AATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA------CAA 195852
|| ||||| || || || || || || || || || || ||||||||||| ||
Sbjct 641089 TATCATCAACGAGCCCACCGCCGCCGCCATCGCGTACGGCCTGGACAAGAAGCACGCCAC 641030
Query 195853 GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACT 195912
|| || | || || | |||||||| || || || || || |||||||| || ||
Sbjct 641029 CACCGGCGAGCAGAACGTGCTCATCTTTGACCTGGGCGGCGGCACCTTTGATGTGTCCCT 640970
Query 195913 TCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGG 195972
|| | || || | || || ||||| || ||||| || || || || || || || ||
Sbjct 640969 GCTGACGATCGAGGAGGGCATCTTCGAGGTGAAGGCCACCGCGGGCGACACCCACCTGGG 640910
Query 195973 TGGTGAAGATTTCGATGCACGTCTTCTCCG-TCATTTGTCTGATGAGTTCCGTCGAAAGA 196031
|| || || || || || || || | | || ||| | |||||| || ||||
Sbjct 640909 CGGCGAGGACTTTGACAACCGCCTGGTCAGCTTCTTCGTC-CAGGAGTTCAAGCGCAAGA 640851
Query 196032 ATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAAC 196091
| ||||| || || || || || | || || || || || | ||||| || || |
Sbjct 640850 ACAAGAAGGACATCAGCGGCAACCCGCGCGCGCTGCGCCGCCTGCGCACTGCCTGCGAGC 640791
Query 196092 GTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTG 196151
| ||||| || ||||| || | | || | | ||||| || || ||| |
Sbjct 640790 GCGCCAAGCGCCAGCTCTCCTCCTCCACCCAGGCCTCCATCGAGATCGACTCCCTGTACG 640731
Query 196152 ACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATT 196211
| || || |||||||| | | || ||||| || || || || ||| | ||| ||
Sbjct 640730 AGGGCATCGACTTCTACTCCGCCATCACCCGCGCCCGCTTCGAGGAGCTGAACATGGACC 640671
Query 196212 TGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGT 196271
|||| | ||||| ||||| || || || | || | || ||||| |||||||| |||
Sbjct 640670 TGTTCCGCAAGTGCATGGACCCGGTGGAGAAGGTCATCCGCGACGCCAAGATGGACAAGG 640611
Query 196272 CTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGA 196331
|| | | || | || || || || || || |||||||| || ||| | ||
Sbjct 640610 GCCAGATCCACGAGGTGGTGCTGGTCGGCGGCTCCACCCGTATCCCCAAGGTCCAGACCC 640551
Query 196332 TGCTTTCTAG--CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGC 196389
||| || || ||| ||||| || || | ||| | |||||||| || || ||
Sbjct 640550 TGC--TCCAGGACTTTTTCAACGGCAAGGAGCTGTGCAAGAGCATCAACCCCGACGAGGC 640493
Query 196390 AGTTGCTTATGGTGCGGCCGTTCAGG 196415
|| || || || || ||||| ||||
Sbjct 640492 CGTCGCCTACGGCGCCGCCGTCCAGG 640467
>seq149
Length=203194
Score = 105 bits (116), Expect = 9e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990
|| ||| | || ||||||||||| |||||||| || || || || || || || || ||
Sbjct 7006 GACAACGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCGGACCAACAGCGCCTG 6947
Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAG 172050
|| ||||| || || ||||| || ||||| || ||||| | || |||||| | || |||
Sbjct 6946 ATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 6887
Query 172051 GAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
||||| || || ||||| || || | || || |||||
Sbjct 6886 GAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 6849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657859324493280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |