Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq243 520 3e-143
>seq243
Length=18593
Score = 520 bits (576), Expect = 3e-143
Identities = 706/979 (72%), Gaps = 4/979 (0%)
Strand=Plus/Minus
Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293
|||||| ||||| || ||| | ||||| | ||||| || ||||| || || |||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 41294 ATGATTCCGTGCCTCCTTGCC-GCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352
||||| || | | | || | || || ||| |||||||||||| ||| | | || ||
Sbjct 3786 ATGATCCC-TACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728
Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412
|| || || || ||||| || || ||||| || | || || | | ||||| || ||
Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668
Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472
||| || || || || || || || | || || || || |||| || ||||||||
Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608
Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532
|||||||||||| | ||||| |||||| | || || || || || | |||||| | |||
Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548
Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATC- 41591
|| ||||| || | || | | | | |||||||| || || |||||| ||| || ||
Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAA-TTATCTTTCC 3489
Query 41592 GACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTG 41651
| |||| ||| | || |||||| ||||| || || || ||||| || || || ||||
Sbjct 3488 GTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTG 3429
Query 41652 CTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGA 41711
|||| ||| || ||||||| ||||||| || || || ||||||| |||||| || || |
Sbjct 3428 CTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTA 3369
Query 41712 TATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATC 41771
| || || || ||||| | ||| | || ||||| || || || || ||| | ||||| |
Sbjct 3368 TTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACC 3309
Query 41772 CTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACG 41831
| || || ||||| ||||| || || ||||||||||| || || ||||| ||||| |
Sbjct 3308 CATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATG 3249
Query 41832 GTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATG 41891
|| | || || || || | |||||||| || |||||| | | || ||| ||
Sbjct 3248 GTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTG 3189
Query 41892 GTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTG 41951
||||||| || || ||| | ||||| |||||||| || || |||||||| || ||||| |
Sbjct 3188 GTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCG 3129
Query 41952 GTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTG 42011
|||| | || |||||||| || |||||||| || ||| | | || ||||| | |
Sbjct 3128 GTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAG 3069
Query 42012 CTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCA 42071
|||| ||||| ||||| |||||||||||| |||| | || | || || ||||| || |
Sbjct 3068 CTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTA 3009
Query 42072 ACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACA 42131
|||| ||||||||||||||||||||||| | | | | | | || | || || ||||
Sbjct 3008 ACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACA 2949
Query 42132 CCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACG 42191
| |||||||| ||| |||||||||| || ||||| | || || |||||||| || || |
Sbjct 2948 CTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 2889
Query 42192 CACACAACTTCCCGCTTGA 42210
||||||| ||||| || ||
Sbjct 2888 CACACAATTTCCCACTAGA 2870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146213750625296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |