Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq243 637 1e-178 >seq243 Length=18593 Score = 637 bits (706), Expect = 1e-178 Identities = 742/997 (74%), Gaps = 8/997 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| | ||||| || ||| | ||||| | |||||||| |||||| Sbjct 3855 TGGGCTCGTTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTT 3796 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTTATTGTCGCTTTCATT 42399 ||||| || ||||| || | | | || || || ||||||| ||||||| || Sbjct 3795 GGTGTTCTTATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATC 3736 Query 42400 GCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTAT 42459 ||||| || || ||||| |||||||| ||||| ||||| || || || || | || ||| Sbjct 3735 GCTGCTCCGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATAT 3676 Query 42460 GGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTG 42519 || || ||||| || ||||| || || || || | ||||||||||| ||||||| Sbjct 3675 GGAAATAACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTT 3616 Query 42520 TATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAG 42579 || | ||||||||||| | | |||||||||||| | || ||||| |||||||| || Sbjct 3615 TACCCAATCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAA 3556 Query 42580 CTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTT 42639 || |||| | ||||| | | || || | || ||| |||| || ||||||||| | Sbjct 3555 CTTATCGTATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTA 3496 Query 42640 TCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCA 42699 || | ||| | || ||| | || |||||| |||||||| || || ||||| |||||| Sbjct 3495 TCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCA 3436 Query 42700 GCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCT 42759 || ||||| || ||| || | |||||| |||| |||||||| || || ||||| ||||| Sbjct 3435 GCTACTGCTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCA 3376 Query 42760 CTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTT 42819 | || ||||| ||||| ||||| || ||| | || ||||| || |||||||||||| | Sbjct 3375 TTAGGTATTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTA 3316 Query 42820 ATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCT 42879 ||||| || |||||||||||||||||||| || ||||||||||| || || || || || Sbjct 3315 ATGCACCCATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCA 3256 Query 42880 ATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA--AGCC 42937 ||||||||| | || || |||||| | | |||||||| |||||||||||| || Sbjct 3255 ATGCATGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCT 3196 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 || | ||| ||||| ||||| ||| | || || ||||| ||||| || || || |||| Sbjct 3195 AACGT--TGGTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATG 3138 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACT 43057 | || || || || | || |||||||| || || |||||||| ||| ||||| |||| Sbjct 3137 GATATTTCGGTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACT 3078 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| ||||| || |||||||| ||| || | || | |||| Sbjct 3077 TCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTA 3018 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA--TCA 43175 |||| |||||||| |||||||| ||||||||||||||| | |||||| ||| || || Sbjct 3017 TGGCATTTAACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGAT--TCACAAGGTCG 2960 Query 43176 TGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCA 43235 ||| || ||||||||||||||| | || ||||| || ||||| | || || ||||| Sbjct 2959 TGTTATTAACACTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCA 2900 Query 43236 CGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCA 43272 || || |||||||| || ||||| || ||| | ||| Sbjct 2899 TGAACGTAATGCACACAATTTCCCACTAGATTTAGCA 2863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143532162534952