Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq243 637 1e-178
>seq243
Length=18593
Score = 637 bits (706), Expect = 1e-178
Identities = 742/997 (74%), Gaps = 8/997 (1%)
Strand=Plus/Minus
Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339
|||| || |||||| | ||||| || ||| | ||||| | |||||||| ||||||
Sbjct 3855 TGGGCTCGTTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTT 3796
Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTTATTGTCGCTTTCATT 42399
||||| || ||||| || | | | || || || ||||||| ||||||| ||
Sbjct 3795 GGTGTTCTTATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATC 3736
Query 42400 GCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTAT 42459
||||| || || ||||| |||||||| ||||| ||||| || || || || | || |||
Sbjct 3735 GCTGCTCCGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATAT 3676
Query 42460 GGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTG 42519
|| || ||||| || ||||| || || || || | ||||||||||| |||||||
Sbjct 3675 GGAAATAACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTT 3616
Query 42520 TATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAG 42579
|| | ||||||||||| | | |||||||||||| | || ||||| |||||||| ||
Sbjct 3615 TACCCAATCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAA 3556
Query 42580 CTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTT 42639
|| |||| | ||||| | | || || | || ||| |||| || ||||||||| |
Sbjct 3555 CTTATCGTATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTA 3496
Query 42640 TCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCA 42699
|| | ||| | || ||| | || |||||| |||||||| || || ||||| ||||||
Sbjct 3495 TCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCA 3436
Query 42700 GCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCT 42759
|| ||||| || ||| || | |||||| |||| |||||||| || || ||||| |||||
Sbjct 3435 GCTACTGCTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCA 3376
Query 42760 CTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTT 42819
| || ||||| ||||| ||||| || ||| | || ||||| || |||||||||||| |
Sbjct 3375 TTAGGTATTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTA 3316
Query 42820 ATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCT 42879
||||| || |||||||||||||||||||| || ||||||||||| || || || || ||
Sbjct 3315 ATGCACCCATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCA 3256
Query 42880 ATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA--AGCC 42937
||||||||| | || || |||||| | | |||||||| |||||||||||| ||
Sbjct 3255 ATGCATGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCT 3196
Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997
|| | ||| ||||| ||||| ||| | || || ||||| ||||| || || || ||||
Sbjct 3195 AACGT--TGGTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATG 3138
Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACT 43057
| || || || || | || |||||||| || || |||||||| ||| ||||| ||||
Sbjct 3137 GATATTTCGGTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACT 3078
Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117
|||| | || |||||||| ||||| || |||||||| ||| || | || | ||||
Sbjct 3077 TCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTA 3018
Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA--TCA 43175
|||| |||||||| |||||||| ||||||||||||||| | |||||| ||| || ||
Sbjct 3017 TGGCATTTAACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGAT--TCACAAGGTCG 2960
Query 43176 TGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCA 43235
||| || ||||||||||||||| | || ||||| || ||||| | || || |||||
Sbjct 2959 TGTTATTAACACTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCA 2900
Query 43236 CGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCA 43272
|| || |||||||| || ||||| || ||| | |||
Sbjct 2899 TGAACGTAATGCACACAATTTCCCACTAGATTTAGCA 2863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143532162534952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |