Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq243 551 2e-152
>seq243
Length=18593
Score = 551 bits (610), Expect = 2e-152
Identities = 717/986 (73%), Gaps = 4/986 (0%)
Strand=Plus/Plus
Query 25876 TGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTT 25935
|||||| || ||||| || || || |||||||| || ||||||||||| | || || ||
Sbjct 2863 TGCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATT 2922
Query 25936 AGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACA-TCTACTACTG 25994
||| ||||| | | ||||||||| || | || || | | || | || |||||||
Sbjct 2923 AGCACGGTTAATAATATCAGCCCAAGT-GTTAATAACACGACCTTGTGAATCAACTACTG 2981
Query 25995 ACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCA 26054
| ||||||||||| |||||||||| |||||||||||| || | ||||| | || || |
Sbjct 2982 ATTGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAA 3041
Query 26055 GCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAA 26114
||| || |||||||| ||||||| ||| | ||||| || | |||||| ||||||||
Sbjct 3042 ACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAA 3101
Query 26115 AACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATG 26174
|| || || || |||||||| | || || || || || ||||| || || || || |
Sbjct 3102 AAGATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAG 3161
Query 26175 TCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTG 26234
| ||||| | ||| || || || || ||| || || | | || || |||||
Sbjct 3162 TTTCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCAC 3221
Query 26235 CAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAA 26294
||| | || ||||| || || || ||||| |||| || | | ||||| || |
Sbjct 3222 GAATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATA 3281
Query 26295 CCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATA 26354
| |||||||||||| |||||||||||||||||| | || |||||||||||||||||||
Sbjct 3282 CACCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATA 3341
Query 26355 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTT 26414
||| |||||| || ||||||||||| ||||| | ||||| |||||| || ||||
Sbjct 3342 CGATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTT 3401
Query 26415 GTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAA 26474
|||| | ||||||| | ||| || || |||||| | | ||||||| ||| ||||
Sbjct 3402 GTCCAATTGGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAA 3461
Query 26475 CAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATG 26534
| ||||| || | ||| |||| | | |||||| |||||| | | || ||||
Sbjct 3462 CTGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATG 3521
Query 26535 CTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCC 26594
| ||||| || ||||| | | || ||||| || ||||| ||||| |||| ||
Sbjct 3522 AACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACC 3581
Query 26595 ACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGG 26654
| ||||| || | ||||||||||||| ||||||||||||| || |||||||| || |
Sbjct 3582 ATTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAG 3641
Query 26655 AGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCT 26714
|| || || || || || ||||| || ||||| || | ||| || || || ||||| |
Sbjct 3642 TTGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTT 3701
Query 26715 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAG 26774
| || || ||||| |||||||| ||||| || ||||| || || | |||||| ||||
Sbjct 3702 CGCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAG 3761
Query 26775 TGGCTGCGAGTAA-GCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTC 26833
| |||| | ||| | |||| |||||||| || || ||||| || ||||| | |||||
Sbjct 3762 TTGCTGTTAATAATGTAGGG-ATCATAAGAACACCAAACCAACCAACATATAAGCGGTTT 3820
Query 26834 TCAGTACTTGTAACCCACTCACAAAA 26859
||||| ||||| ||||||||||||||
Sbjct 3821 TCAGTGCTTGTTACCCACTCACAAAA 3846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147711343974080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |