Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq243 551 2e-152 >seq243 Length=18593 Score = 551 bits (610), Expect = 2e-152 Identities = 717/986 (73%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 25876 TGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTT 25935 |||||| || ||||| || || || |||||||| || ||||||||||| | || || || Sbjct 2863 TGCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATT 2922 Query 25936 AGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACA-TCTACTACTG 25994 ||| ||||| | | ||||||||| || | || || | | || | || ||||||| Sbjct 2923 AGCACGGTTAATAATATCAGCCCAAGT-GTTAATAACACGACCTTGTGAATCAACTACTG 2981 Query 25995 ACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCA 26054 | ||||||||||| |||||||||| |||||||||||| || | ||||| | || || | Sbjct 2982 ATTGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAA 3041 Query 26055 GCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAA 26114 ||| || |||||||| ||||||| ||| | ||||| || | |||||| |||||||| Sbjct 3042 ACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAA 3101 Query 26115 AACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATG 26174 || || || || |||||||| | || || || || || ||||| || || || || | Sbjct 3102 AAGATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAG 3161 Query 26175 TCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTG 26234 | ||||| | ||| || || || || ||| || || | | || || ||||| Sbjct 3162 TTTCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCAC 3221 Query 26235 CAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAA 26294 ||| | || ||||| || || || ||||| |||| || | | ||||| || | Sbjct 3222 GAATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATA 3281 Query 26295 CCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATA 26354 | |||||||||||| |||||||||||||||||| | || ||||||||||||||||||| Sbjct 3282 CACCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATA 3341 Query 26355 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTT 26414 ||| |||||| || ||||||||||| ||||| | ||||| |||||| || |||| Sbjct 3342 CGATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTT 3401 Query 26415 GTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAA 26474 |||| | ||||||| | ||| || || |||||| | | ||||||| ||| |||| Sbjct 3402 GTCCAATTGGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAA 3461 Query 26475 CAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATG 26534 | ||||| || | ||| |||| | | |||||| |||||| | | || |||| Sbjct 3462 CTGCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATG 3521 Query 26535 CTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCC 26594 | ||||| || ||||| | | || ||||| || ||||| ||||| |||| || Sbjct 3522 AACAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACC 3581 Query 26595 ACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGG 26654 | ||||| || | ||||||||||||| ||||||||||||| || |||||||| || | Sbjct 3582 ATTCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAG 3641 Query 26655 AGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCT 26714 || || || || || || ||||| || ||||| || | ||| || || || ||||| | Sbjct 3642 TTGGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTT 3701 Query 26715 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAG 26774 | || || ||||| |||||||| ||||| || ||||| || || | |||||| |||| Sbjct 3702 CGCGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAG 3761 Query 26775 TGGCTGCGAGTAA-GCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTC 26833 | |||| | ||| | |||| |||||||| || || ||||| || ||||| | ||||| Sbjct 3762 TTGCTGTTAATAATGTAGGG-ATCATAAGAACACCAAACCAACCAACATATAAGCGGTTT 3820 Query 26834 TCAGTACTTGTAACCCACTCACAAAA 26859 ||||| ||||| |||||||||||||| Sbjct 3821 TCAGTGCTTGTTACCCACTCACAAAA 3846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147711343974080