Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq243 686 0.0 >seq243 Length=18593 Score = 686 bits (760), Expect = 0.0 Identities = 734/970 (76%), Gaps = 0/970 (0%) Strand=Plus/Minus Query 154976 AGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCC 155035 |||||||||| |||| |||||| | ||||| |||||||| |||||||||||||||| Sbjct 3839 AGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTTATGATCC 3780 Query 155036 CTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAG 155095 || | | | || |||| || ||| |||| || || ||||| || || |||| Sbjct 3779 CTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCGCCAGTAG 3720 Query 155096 ACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCT 155155 | |||||||||||||| ||||| || | ||||| ||| | ||||| || ||||| || | Sbjct 3719 ATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAACATAATTT 3660 Query 155156 CTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAG 155215 |||| ||||| || || | |||||||||||||||| | || || || || || ||||||| Sbjct 3659 CTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAATCTGGGAAG 3600 Query 155216 CAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACT 155275 | || ||||||| || ||||| || |||||||| |||| ||||||| | || | |||| Sbjct 3599 CTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGTATGTCACT 3540 Query 155276 TCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCA 155335 | | | ||||| ||||| |||||| | |||||| | |||| |||| | || | Sbjct 3539 TTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCGTTTAGGTA 3480 Query 155336 TGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCC 155395 ||||||| |||||| ||||| || || ||||| || |||| || ||||||||| Sbjct 3479 TGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCTGTATTCA 3420 Query 155396 TTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTA 155455 || ||||||| | || |||||||| |||||||||| ||||| | ||||| ||||||| Sbjct 3419 TTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATTTCTGGTA 3360 Query 155456 CTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACA 155515 |||| || | |||| |||| |||||||||||||| || || | |||||||| ||||| | Sbjct 3359 CTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCCATTCCATA 3300 Query 155516 TGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGG 155575 ||||||| || || ||||| || ||||| || | || ||||| ||||| |||||||| | Sbjct 3299 TGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGGTTCATTAG 3240 Query 155576 TGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGT 155635 | || ||||| |||| |||||||| ||||| | || ||| ||| ||||||||| | Sbjct 3239 TAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGGTTACAAAT 3180 Query 155636 TCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTA 155695 |||||||| ||||||||||||| ||||| || |||||||||||||| ||||||||| | | Sbjct 3179 TCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGGTCGTTTAA 3120 Query 155696 TCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGC 155755 | ||||| || ||||| || || ||||| | | | ||||||||| | ||||| |||| Sbjct 3119 TTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGC 3060 Query 155756 CTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACG 155815 | || || | || ||| |||||| | ||| | ||||| |||||||| ||| | || | Sbjct 3059 CAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAATG 3000 Query 155816 GTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAG 155875 |||||||||| ||||| || ||||| || | ||| || || || ||||| | Sbjct 2999 GTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACACTTGGGCTG 2940 Query 155876 ACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACT 155935 | ||| ||||||| ||| ||||||||||||||| ||||| || ||||| || ||||| | Sbjct 2939 ATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCACACAATT 2880 Query 155936 TCCCTCTTGA 155945 |||| || || Sbjct 2879 TCCCACTAGA 2870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584832465895440