Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_020875.1
Length=182801
Score E
Sequences producing significant alignments: (Bits) Value
seq243 686 0.0
>seq243
Length=18593
Score = 686 bits (760), Expect = 0.0
Identities = 734/970 (76%), Gaps = 0/970 (0%)
Strand=Plus/Minus
Query 154976 AGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCC 155035
|||||||||| |||| |||||| | ||||| |||||||| ||||||||||||||||
Sbjct 3839 AGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTTATGATCC 3780
Query 155036 CTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAG 155095
|| | | | || |||| || ||| |||| || || ||||| || || ||||
Sbjct 3779 CTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCGCCAGTAG 3720
Query 155096 ACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCT 155155
| |||||||||||||| ||||| || | ||||| ||| | ||||| || ||||| || |
Sbjct 3719 ATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAACATAATTT 3660
Query 155156 CTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAG 155215
|||| ||||| || || | |||||||||||||||| | || || || || || |||||||
Sbjct 3659 CTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAATCTGGGAAG 3600
Query 155216 CAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACT 155275
| || ||||||| || ||||| || |||||||| |||| ||||||| | || | ||||
Sbjct 3599 CTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGTATGTCACT 3540
Query 155276 TCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCA 155335
| | | ||||| ||||| |||||| | |||||| | |||| |||| | || |
Sbjct 3539 TTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCGTTTAGGTA 3480
Query 155336 TGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCC 155395
||||||| |||||| ||||| || || ||||| || |||| || |||||||||
Sbjct 3479 TGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCTGTATTCA 3420
Query 155396 TTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTA 155455
|| ||||||| | || |||||||| |||||||||| ||||| | ||||| |||||||
Sbjct 3419 TTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATTTCTGGTA 3360
Query 155456 CTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACA 155515
|||| || | |||| |||| |||||||||||||| || || | |||||||| ||||| |
Sbjct 3359 CTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCCATTCCATA 3300
Query 155516 TGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGG 155575
||||||| || || ||||| || ||||| || | || ||||| ||||| |||||||| |
Sbjct 3299 TGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGGTTCATTAG 3240
Query 155576 TGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGT 155635
| || ||||| |||| |||||||| ||||| | || ||| ||| ||||||||| |
Sbjct 3239 TAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGGTTACAAAT 3180
Query 155636 TCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTA 155695
|||||||| ||||||||||||| ||||| || |||||||||||||| ||||||||| | |
Sbjct 3179 TCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGGTCGTTTAA 3120
Query 155696 TCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGC 155755
| ||||| || ||||| || || ||||| | | | ||||||||| | ||||| ||||
Sbjct 3119 TTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGC 3060
Query 155756 CTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACG 155815
| || || | || ||| |||||| | ||| | ||||| |||||||| ||| | || |
Sbjct 3059 CAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAATG 3000
Query 155816 GTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAG 155875
|||||||||| ||||| || ||||| || | ||| || || || ||||| |
Sbjct 2999 GTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACACTTGGGCTG 2940
Query 155876 ACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACT 155935
| ||| ||||||| ||| ||||||||||||||| ||||| || ||||| || ||||| |
Sbjct 2939 ATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCACACAATT 2880
Query 155936 TCCCTCTTGA 155945
|||| || ||
Sbjct 2879 TCCCACTAGA 2870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 584832465895440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |