Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq243 601 1e-167 >seq243 Length=18593 Score = 601 bits (666), Expect = 1e-167 Identities = 723/983 (74%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 40533 GCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTC 40592 ||||| ||||| || || ||||| || ||||| || ||||| ||||||||||| ||| | Sbjct 2864 GCTAAATCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2923 Query 40593 TGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGAC 40652 | ||||| || |||||||||||| ||| || ||| | | || |||||||| Sbjct 2924 GCACGGTTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGAT 2983 Query 40653 TGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGC 40712 ||||||||||| |||||||| | |||||| |||||||| || ||||| | | |||| | Sbjct 2984 TGGTTAAAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAAC 3043 Query 40713 CATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAAT 40772 || || |||| ||| || ||||| | | |||||||||| | ||| || || || Sbjct 3044 CAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAA 3103 Query 40773 GAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTC 40832 || || ||||| || |||| | ||| || || || || |||||||||||||| ||||| Sbjct 3104 GATGCGTATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTT 3163 Query 40833 TCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGA 40892 || ||| || || || || || || ||| ||||| |||| || || || ||| Sbjct 3164 TCTTCTTGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGA 3223 Query 40893 ATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACG 40952 || | || ||||| || | || ||||| |||| ||| || | ||||||||| || Sbjct 3224 ATTAAAGAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACA 3283 Query 40953 CCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACA 41012 || ||||| || |||||||||||||||||||| | |||||| |||||||||||||| || Sbjct 3284 CCAGCAACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACG 3343 Query 41013 AACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGA 41072 | ||| || ||||| || ||| || ||||| ||||||||||||||||| ||||| || Sbjct 3344 ATCATAAAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGT 3403 Query 41073 CCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACA 41132 || | |||||||| | ||||||||| |||||| | | || |||| || || || Sbjct 3404 CCAATTGGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACT 3463 Query 41133 AATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCT 41192 ||||| || | |||||||| | | | || | |||||| | | ||| ||||| Sbjct 3464 GCGATCCACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGAA 3523 Query 41193 GCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCAC 41252 | ||||| ||||||||| | || || ||||| || ||||| || || |||| ||| Sbjct 3524 CAAATTCCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCAT 3583 Query 41253 TCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTC 41312 ||||| || | | ||||||||||||||||| ||||||| || |||||||| || | Sbjct 3584 TCGTCAAGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTT 3643 Query 41313 GGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCA 41372 || || ||||| ||||| || || || || || || | ||| || || || || || || Sbjct 3644 GGTACTACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCG 3703 Query 41373 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGGTA 41432 || || ||||| |||||||| ||||| || |||||||| ||||| || ||| || || Sbjct 3704 CGAATACCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAGTT 3763 Query 41433 GCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCG 41492 || |||| ||||| || ||||| || |||||||||||||| || |||| |||||| || Sbjct 3764 GCTGTTAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCA 3823 Query 41493 GTGCTAGTGACCCAGTTACAAAA 41515 ||||| || ||||| | |||||| Sbjct 3824 GTGCTTGTTACCCACTCACAAAA 3846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143701761781716