Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq243 639 2e-178 >seq243 Length=18593 Score = 639 bits (708), Expect = 2e-178 Identities = 714/954 (75%), Gaps = 0/954 (0%) Strand=Plus/Plus Query 67368 TCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTG 67427 || || ||||| ||||| || ||||| || |||||||||||||| ||||| || | | Sbjct 2870 TCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGG 2929 Query 67428 TTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACGGATTGGTTG 67487 |||| || || |||||||| ||| || ||| || ||||| || |||||||| Sbjct 2930 TTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGATTGGTTA 2989 Query 67488 AAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATG 67547 ||||||||||| || | ||| |||||||||||||| | ||| | ||||| ||||| || Sbjct 2990 AAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATA 3049 Query 67548 CAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCA 67607 | || || || | ||||| | ||||||||| | | | ||||| || |||||||| Sbjct 3050 CCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAAGATGCG 3109 Query 67608 TACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCT 67667 || ||||| || || |||||||| |||||||||||||| || ||||||||||| |||||| Sbjct 3110 TATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTTTCTTCT 3169 Query 67668 TCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGA 67727 | ||||||||| |||||||| ||| || || | ||||| ||||| | || | | Sbjct 3170 TGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGAATTAAA 3229 Query 67728 GAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCT 67787 |||||||| || | ||||| ||||| ||| ||| | ||||||||| |||||||| || Sbjct 3230 GAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACACCAGCA 3289 Query 67788 ACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATG 67847 || ||||||||||||||||||||||| | ||||| || ||||||||||| |||| ||| Sbjct 3290 ACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACGATCATA 3349 Query 67848 TAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAA 67907 | || ||||||||||||||||| | ||||| | |||||||| |||||||| || | Sbjct 3350 AAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGTCCAATT 3409 Query 67908 GGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATC 67967 ||||| | | ||| ||||| ||||||| || || || || || || || |||| Sbjct 3410 GGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACTGCGATC 3469 Query 67968 CAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATT 68027 || ||||||||||| | |||| |||| | |||||| | |||||| ||||| ||| Sbjct 3470 CACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGAACAAATT 3529 Query 68028 CCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCT 68087 || | | ||||| | || | ||||||| |||||||||||||||| ||||| || || Sbjct 3530 CCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCATTCGTCA 3589 Query 68088 AGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACA 68147 |||| || ||||||||||| || || || || | ||| |||||||||||| | || || Sbjct 3590 AGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTTGGTACT 3649 Query 68148 ACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATA 68207 ||||| |||||||| ||||| || || || | | ||||||| || ||||| | ||| Sbjct 3650 ACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCGCGAATA 3709 Query 68208 CCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCG 68267 ||||| ||||| ||||| || || || || || || || || || ||| | ||||| Sbjct 3710 CCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAGTTGCTGTT 3769 Query 68268 AGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGATTGTCA 68321 | || ||| ||||| | ||||| |||||||||||||| | ||| || ||| Sbjct 3770 AATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCA 3823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566944549521840