Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_021072.1
Length=178807
Score E
Sequences producing significant alignments: (Bits) Value
seq243 702 0.0
seq260 589 2e-163
>seq243
Length=18593
Score = 702 bits (778), Expect = 0.0
Identities = 744/978 (76%), Gaps = 2/978 (0%)
Strand=Plus/Plus
Query 67849 TCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGG 67908
|| || ||||| |||||||| ||||| |||||||||||||||||||| | | ||| |||
Sbjct 2870 TCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGG 2929
Query 67909 TTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTG 67968
|| | || || ||||| || | ||| ||| ||||| | || |||||
Sbjct 2930 TTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGATTGGTTA 2989
Query 67969 AAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATA 68028
|||||||||||||| | ||| |||||||| || || ||| | ||||| ||||| |||
Sbjct 2990 AAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATA 3049
Query 68029 CCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCA 68088
||||| || ||||| ||||| | ||||||||| | ||||| ||||| || || |||||
Sbjct 3050 CCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAAGATGCG 3109
Query 68089 TACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCT 68148
|| ||||| || | ||||||||| |||||||| ||||| || ||||||||||| ||||||
Sbjct 3110 TATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTTTCTTCT 3169
Query 68149 TCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGT 68208
| ||| ||||| ||||||||| ||| || || ||||||| |||||||||| |
Sbjct 3170 TGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGAATTAAA 3229
Query 68209 GAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCA 68268
|||||||| || | ||||||||||||||| || | || ||||||||||| ||||||
Sbjct 3230 GAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACACCAGCA 3289
Query 68269 ACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATG 68328
|| || ||||||||||| |||||||| | ||||| || ||||||||||| || | |||
Sbjct 3290 ACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACGATCATA 3349
Query 68329 TAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAA 68388
| ||||||||||||||||| || | ||||| | |||||||| |||||||| || |
Sbjct 3350 AAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGTCCAATT 3409
Query 68389 GGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATC 68448
||||| | | ||| || || | ||||| ||||||||||| || || ||||| ||||
Sbjct 3410 GGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACTGCGATC 3469
Query 68449 CAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGATA 68508
|| ||||||||||| | ||| | || | |||||||||||| |||||||||| | | ||
Sbjct 3470 CACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGAACAAATT 3529
Query 68509 CCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCA 68568
|| | | |||||| | | | |||||| |||| |||||||| || ||||| || |||
Sbjct 3530 CCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCATTCGTCA 3589
Query 68569 AGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACA 68628
|| | || |||||||| || || ||||| || | ||||||||| |||||| | || ||
Sbjct 3590 AGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTTGGTACT 3649
Query 68629 ACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATA 68688
||||| |||||||| ||||| || ||||| || | |||||| | || ||||| ||||||
Sbjct 3650 ACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCGCGAATA 3709
Query 68689 CCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGAT-GAAACAGATGGTTGCTGC 68747
||||| || || || || ||||||||||| || |||| || |||||| | |||||||
Sbjct 3710 CCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAG-TAGTTGCTGT 3768
Query 68748 AAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGA 68807
| | ||||||||||| || || || ||||||||||| || | |||||| || |||
Sbjct 3769 TAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCAGTGCT 3828
Query 68808 AGTCACCCATTCGCAGAA 68825
|| ||||| || || ||
Sbjct 3829 TGTTACCCACTCACAAAA 3846
>seq260
Length=66046
Score = 589 bits (652), Expect = 2e-163
Identities = 755/1033 (73%), Gaps = 6/1033 (1%)
Strand=Plus/Plus
Query 66585 TATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGT 66644
|||||||| || || ||||| || | ||| || ||||||||||| || |||||||| ||
Sbjct 56633 TATTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACTAATTTTTCATGAGGC 56692
Query 66645 TGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAG 66704
||||| || |||| ||| ||||||| |||||||||||| ||||| || ||||| ||
Sbjct 56693 TGATCTTGAGCAGCCATCCAAGCACGAATACCTTCATTCAAAAGAATATTTTTTGTATAA 56752
Query 66705 AACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 66764
|| || || || ||||||||||| || || | || ||||| || || || || | |||
Sbjct 56753 AAAGTTTCAAATTCTGGGTCTTCAGCAGCACGAATTTCTTGTGAAACGAAATCGGATGCA 56812
Query 66765 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGA 66824
|| | || | || | || | | ||| | | ||| ||||| | ||| | || ||
Sbjct 56813 CGTAAATTTAATGCTAAGCCTACTACACCAAAAGCACTAGTCCATAAACCAGTTACTGGT 56872
Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884
||||| |||||||||||||| ||||| | ||||| |||||| | ||| || || ||
Sbjct 56873 ACAAATAACATAAAGAAATGTAACCAACGTTTATTAGAAAACGCTACACCGAATATTTGT 56932
Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944
||||| ||||| ||||| || || | || ||||||||||| ||||||| | | ||
Sbjct 56933 GACCAAAAGCGATTTGCTGTTACAAAAGAATAAGTTTCTTCTGCTTGAGTTGGATTAAAC 56992
Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004
|| || |||||||| || ||||||||| | |||||||| |||||||| | |||
Sbjct 56993 GCACGAAATGTGTTTGCACCGTCGCCATCTTCAAATAGAGTATTTTCTACTGTTGCGCCA 57052
Query 67005 TGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGG 67064
||||| ||| |||| | ||| | || || | ||| || ||||||||||||||||| ||
Sbjct 57053 TGAATTGCACAAAGAAGCGCAGCTCCTAGAACACCAGCAACACCCATCATATGAAAAGGA 57112
Query 67065 TTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACC 67124
||||| |||||||| ||||| ||||| | ||| | || || || || || |||| ||
Sbjct 57113 TTCAAAGTCCAGTTGTGGAAACCTTGGAAGAATAAAATAAAACGGAAAATAGCTGCAACA 57172
Query 67125 CCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTA 67184
|| ||| || || ||||||||||| |||||||| | ||||| || | ||| ||| |
Sbjct 57173 CCAAAACTCGGTGCAAAAAACCAACTAGATTGACCTAATGGGTAAATTAAAAATACAGCA 57232
Query 67185 ACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGA-TGAG 67243
|||||||| || ||||| |||| || ||||| || || || || || || | |||
Sbjct 57233 ACAAAAACTGCAATAGGTGCAGAAAATGCAATTGCGTTATATGGGCGAATTTTAACTGA- 57291
Query 67244 ACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGC 67303
|||||| | ||| || || |||||||| || ||||||| || ||||| ||||| || ||
Sbjct 57292 ACGTGCGATTTCGAATTGACGAAGCATAAATCCAATTAAAGAAAAAGCACCGTGTAGTGC 57351
Query 67304 CACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGG 67363
||||| |||| || |||||||||||| ||| || ||||| || |||| || ||
Sbjct 57352 AACAAATGTCCAAAGACCTCCAAGTTGGCACCAACGAGTAAAATCACCTTGAGCTTCGGG 57411
Query 67364 ACCCCA-AAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTG 67422
|||||| || | || || |||||| |||||| || ||| || || || ||||| | |
Sbjct 57412 ACCCCATAAAAATAATAA-AGAATGCCCCATACTATTAGCGGGTGTAGAAACAGCAACAG 57470
Query 67423 TGAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGA 67482
| | ||| || |||||| | |||| || || | || ||||| ||||| | |
Sbjct 57471 TTAAAAAGTTGCAACCCTCTAAATAAGAAGTAGCTAAGCCATGAGTATACCAAGAACTTA 57530
Query 67483 CAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGT-GGGAAAAAGAAGT 67541
|||| || || ||||| | ||| ||||| | ||| | ||| ||||| ||||| || || |
Sbjct 57531 CAAATGTTGTTCCAGTTAACCAACCACCTAATGCTAAATATGCAGTAGGGAATAATAA-T 57589
Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATCG 67601
|| || ||||| || | ||| ||||| ||||| || |||||||||||||| || |||
Sbjct 57590 AGACCTGACCAGCCAATAAATACAAAACGATCACGACGAAGCCAGTCATCAACGATATCA 57649
Query 67602 AACCACCCCCGTT 67614
||||| || ||||
Sbjct 57650 AACCAACCACGTT 57662
Score = 107 bits (118), Expect = 2e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570
||||||||||||| ||||||||||||||||||| ||||||| |||| ||||| ||||||
Sbjct 22035 CTCCCCAGGTAGGGATTGAACCTACGACCAATCGGTTAACAGCCGATCGCTCTACCGCTG 21976
Query 35571 AGCTACTGAGGATT 35584
||||||||||||||
Sbjct 21975 AGCTACTGAGGATT 21962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572051725645680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |