Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq243 702 0.0 seq260 589 2e-163 >seq243 Length=18593 Score = 702 bits (778), Expect = 0.0 Identities = 744/978 (76%), Gaps = 2/978 (0%) Strand=Plus/Plus Query 67849 TCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGG 67908 || || ||||| |||||||| ||||| |||||||||||||||||||| | | ||| ||| Sbjct 2870 TCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGG 2929 Query 67909 TTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTG 67968 || | || || ||||| || | ||| ||| ||||| | || ||||| Sbjct 2930 TTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGATTGGTTA 2989 Query 67969 AAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATA 68028 |||||||||||||| | ||| |||||||| || || ||| | ||||| ||||| ||| Sbjct 2990 AAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATA 3049 Query 68029 CCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCA 68088 ||||| || ||||| ||||| | ||||||||| | ||||| ||||| || || ||||| Sbjct 3050 CCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAAGATGCG 3109 Query 68089 TACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCT 68148 || ||||| || | ||||||||| |||||||| ||||| || ||||||||||| |||||| Sbjct 3110 TATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTTTCTTCT 3169 Query 68149 TCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGT 68208 | ||| ||||| ||||||||| ||| || || ||||||| |||||||||| | Sbjct 3170 TGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGAATTAAA 3229 Query 68209 GAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCA 68268 |||||||| || | ||||||||||||||| || | || ||||||||||| |||||| Sbjct 3230 GAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACACCAGCA 3289 Query 68269 ACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATG 68328 || || ||||||||||| |||||||| | ||||| || ||||||||||| || | ||| Sbjct 3290 ACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACGATCATA 3349 Query 68329 TAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAA 68388 | ||||||||||||||||| || | ||||| | |||||||| |||||||| || | Sbjct 3350 AAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGTCCAATT 3409 Query 68389 GGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATC 68448 ||||| | | ||| || || | ||||| ||||||||||| || || ||||| |||| Sbjct 3410 GGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACTGCGATC 3469 Query 68449 CAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGATA 68508 || ||||||||||| | ||| | || | |||||||||||| |||||||||| | | || Sbjct 3470 CACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGAACAAATT 3529 Query 68509 CCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCA 68568 || | | |||||| | | | |||||| |||| |||||||| || ||||| || ||| Sbjct 3530 CCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCATTCGTCA 3589 Query 68569 AGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACA 68628 || | || |||||||| || || ||||| || | ||||||||| |||||| | || || Sbjct 3590 AGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTTGGTACT 3649 Query 68629 ACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATA 68688 ||||| |||||||| ||||| || ||||| || | |||||| | || ||||| |||||| Sbjct 3650 ACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCGCGAATA 3709 Query 68689 CCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGAT-GAAACAGATGGTTGCTGC 68747 ||||| || || || || ||||||||||| || |||| || |||||| | ||||||| Sbjct 3710 CCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAG-TAGTTGCTGT 3768 Query 68748 AAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGA 68807 | | ||||||||||| || || || ||||||||||| || | |||||| || ||| Sbjct 3769 TAATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCAGTGCT 3828 Query 68808 AGTCACCCATTCGCAGAA 68825 || ||||| || || || Sbjct 3829 TGTTACCCACTCACAAAA 3846 >seq260 Length=66046 Score = 589 bits (652), Expect = 2e-163 Identities = 755/1033 (73%), Gaps = 6/1033 (1%) Strand=Plus/Plus Query 66585 TATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGT 66644 |||||||| || || ||||| || | ||| || ||||||||||| || |||||||| || Sbjct 56633 TATTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACTAATTTTTCATGAGGC 56692 Query 66645 TGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAG 66704 ||||| || |||| ||| ||||||| |||||||||||| ||||| || ||||| || Sbjct 56693 TGATCTTGAGCAGCCATCCAAGCACGAATACCTTCATTCAAAAGAATATTTTTTGTATAA 56752 Query 66705 AACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 66764 || || || || ||||||||||| || || | || ||||| || || || || | ||| Sbjct 56753 AAAGTTTCAAATTCTGGGTCTTCAGCAGCACGAATTTCTTGTGAAACGAAATCGGATGCA 56812 Query 66765 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGA 66824 || | || | || | || | | ||| | | ||| ||||| | ||| | || || Sbjct 56813 CGTAAATTTAATGCTAAGCCTACTACACCAAAAGCACTAGTCCATAAACCAGTTACTGGT 56872 Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 ||||| |||||||||||||| ||||| | ||||| |||||| | ||| || || || Sbjct 56873 ACAAATAACATAAAGAAATGTAACCAACGTTTATTAGAAAACGCTACACCGAATATTTGT 56932 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 ||||| ||||| ||||| || || | || ||||||||||| ||||||| | | || Sbjct 56933 GACCAAAAGCGATTTGCTGTTACAAAAGAATAAGTTTCTTCTGCTTGAGTTGGATTAAAC 56992 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004 || || |||||||| || ||||||||| | |||||||| |||||||| | ||| Sbjct 56993 GCACGAAATGTGTTTGCACCGTCGCCATCTTCAAATAGAGTATTTTCTACTGTTGCGCCA 57052 Query 67005 TGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGG 67064 ||||| ||| |||| | ||| | || || | ||| || ||||||||||||||||| || Sbjct 57053 TGAATTGCACAAAGAAGCGCAGCTCCTAGAACACCAGCAACACCCATCATATGAAAAGGA 57112 Query 67065 TTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACC 67124 ||||| |||||||| ||||| ||||| | ||| | || || || || || |||| || Sbjct 57113 TTCAAAGTCCAGTTGTGGAAACCTTGGAAGAATAAAATAAAACGGAAAATAGCTGCAACA 57172 Query 67125 CCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTA 67184 || ||| || || ||||||||||| |||||||| | ||||| || | ||| ||| | Sbjct 57173 CCAAAACTCGGTGCAAAAAACCAACTAGATTGACCTAATGGGTAAATTAAAAATACAGCA 57232 Query 67185 ACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGA-TGAG 67243 |||||||| || ||||| |||| || ||||| || || || || || || | ||| Sbjct 57233 ACAAAAACTGCAATAGGTGCAGAAAATGCAATTGCGTTATATGGGCGAATTTTAACTGA- 57291 Query 67244 ACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGC 67303 |||||| | ||| || || |||||||| || ||||||| || ||||| ||||| || || Sbjct 57292 ACGTGCGATTTCGAATTGACGAAGCATAAATCCAATTAAAGAAAAAGCACCGTGTAGTGC 57351 Query 67304 CACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGG 67363 ||||| |||| || |||||||||||| ||| || ||||| || |||| || || Sbjct 57352 AACAAATGTCCAAAGACCTCCAAGTTGGCACCAACGAGTAAAATCACCTTGAGCTTCGGG 57411 Query 67364 ACCCCA-AAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTG 67422 |||||| || | || || |||||| |||||| || ||| || || || ||||| | | Sbjct 57412 ACCCCATAAAAATAATAA-AGAATGCCCCATACTATTAGCGGGTGTAGAAACAGCAACAG 57470 Query 67423 TGAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGA 67482 | | ||| || |||||| | |||| || || | || ||||| ||||| | | Sbjct 57471 TTAAAAAGTTGCAACCCTCTAAATAAGAAGTAGCTAAGCCATGAGTATACCAAGAACTTA 57530 Query 67483 CAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGT-GGGAAAAAGAAGT 67541 |||| || || ||||| | ||| ||||| | ||| | ||| ||||| ||||| || || | Sbjct 57531 CAAATGTTGTTCCAGTTAACCAACCACCTAATGCTAAATATGCAGTAGGGAATAATAA-T 57589 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATCG 67601 || || ||||| || | ||| ||||| ||||| || |||||||||||||| || ||| Sbjct 57590 AGACCTGACCAGCCAATAAATACAAAACGATCACGACGAAGCCAGTCATCAACGATATCA 57649 Query 67602 AACCACCCCCGTT 67614 ||||| || |||| Sbjct 57650 AACCAACCACGTT 57662 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||||||||| ||||||||||||||||||| ||||||| |||| ||||| |||||| Sbjct 22035 CTCCCCAGGTAGGGATTGAACCTACGACCAATCGGTTAACAGCCGATCGCTCTACCGCTG 21976 Query 35571 AGCTACTGAGGATT 35584 |||||||||||||| Sbjct 21975 AGCTACTGAGGATT 21962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572051725645680