Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq84 107 6e-18 >seq84 Length=279745 Score = 107 bits (118), Expect = 6e-18 Identities = 188/271 (69%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | ||| ||||| ||| | | || ||||| || || || || | | || || Sbjct 192699 CATCAGGTCCTCCATGGCCTTCACCAGGCGGCGCTGGATGTAGCCCGTGCTGGCGGTCTT 192758 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || || || || | || |||| || ||||| || |||||||| | ||| | ||| Sbjct 192759 CACCGCCGTGTCGATCAATCCCTCACGCCCGCCCATGGCGTGGAAGAAGAACTCCTGCGG 192818 Query 302685 TCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGA 302743 ||| || || | | ||||| |||| ||||| || |||| |||||| | |||| Sbjct 192819 -CGTCAGGCCGCGCAGGTAGGAGTTCTCCACGAATCCGCGCGACTCGGGGCCAAAGTCGT 192877 Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 |||||||||||| ||||| || | | |||| | ||||| ||||| || || | Sbjct 192878 CCTTGGTAAAGTGGGGCAGAGTGCGCTGGGAGAAGCCAAAGGGGATGCGCTTGCCCTCCA 192937 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 |||||||||| || | ||||| ||||||||| Sbjct 192938 CGTTCTGCTGCCCAACGCACGCAATCATCTG 192968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810547234038