Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq243 713 0.0 seq260 571 6e-158 >seq243 Length=18593 Score = 713 bits (790), Expect = 0.0 Identities = 747/979 (76%), Gaps = 2/979 (0%) Strand=Plus/Minus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 ||| || ||||||||||| || | |||||| | ||||| |||||||| || || || Sbjct 3847 TTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCT 3788 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTC-ATCGTCGCCTTCGTCGCTGCTC 157697 ||||| || || | || ||||||| | |||||| || |||| || ||||||||| Sbjct 3787 TATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTC 3729 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | || || || || || || || || ||||| || | |||||| | | ||||| || | Sbjct 3728 CGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATA 3669 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 |||| || ||||| || || |||||| |||| |||||||||||| | || || || || | Sbjct 3668 ACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAA 3609 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 |||||||||| || || ||||| || ||| | ||||| ||||| |||| |||||| | | Sbjct 3608 TCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCG 3549 Query 157878 TATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACC 157937 ||| |||||| || | || || | | |||||||||| ||||| |||||| | || | || Sbjct 3548 TATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCC 3489 Query 157938 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 157997 ||||||||||||| || |||||| || || ||||| || || || |||||||| ||| Sbjct 3488 GTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTG 3429 Query 157998 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158057 |||||||| | | ||||| | || |||||||| ||||| |||| |||||| | |||| Sbjct 3428 CTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTA 3369 Query 158058 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158117 | ||||||||||| || | ||| | ||||||||||||||||| ||||| | ||||||| Sbjct 3368 TTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACC 3309 Query 158118 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 158177 | ||||||||||| ||||||||||| ||||| ||||| || | || ||||| ||||| | Sbjct 3308 CATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATG 3249 Query 158178 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACG 158237 | | || ||||| || | |||||||||| ||||||| || || ||| | Sbjct 3248 GTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTG 3189 Query 158238 GTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 158297 ||||||| ||||| ||| | ||||| || || |||||||| || || ||||| || |||| Sbjct 3188 GTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCG 3129 Query 158298 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158357 ||||||| || ||||||||||| || || || ||||| ||||| || ||||||||| | | Sbjct 3128 GTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAG 3069 Query 158358 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 158417 |||| ||||| ||||| || || ||||| || || | || | || || |||||||| | Sbjct 3068 CTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTA 3009 Query 158418 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158477 || | || ||||||||||| ||||| || | ||||| || |||||||| | |||| Sbjct 3008 ACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACA 2949 Query 158478 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158537 | ||||| ||| | | ||||| ||| |||||||||||||||||||||||| ||||| | Sbjct 2948 CTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 2889 Query 158538 CACACAACTTCCCACTCGA 158556 ||||||| |||||||| || Sbjct 2888 CACACAATTTCCCACTAGA 2870 >seq260 Length=66046 Score = 571 bits (632), Expect = 6e-158 Identities = 748/1028 (73%), Gaps = 6/1028 (1%) Strand=Plus/Minus Query 159288 GGGTGGTTCGACATCCTCGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGG 159347 || ||||| || ||| | |||||||||||| || ||||| ||||| ||| | || ||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 159348 TCTGGACTACTACTTCTTCCC-ACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCAC 159406 || || ||| || || ||||| ||||| ||| | || | || |||||| | ||||| || Sbjct 57597 TCAGGTCTATTA-TTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 159407 AGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAA 159466 | | ||||| | |||||| || || || | |||| ||| ||| | |||||| || Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479 Query 159467 CTTTCTCACAGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACT 159526 |||| | || | ||||| || || || ||| | |||||| |||||| || || | | Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTT 57420 Query 159527 T-TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGA 159585 | |||||||| || |||| || |||| || |||||||||||||| || | |||| Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360 Query 159586 ATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAAC 159645 ||||| ||||| |||||||| || | ||||||| || ||||| ||||| || ||| Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300 Query 159646 TGGCACGTCTCA-TTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCT 159704 | |||||| ||| || || || || || || || ||||| || |||| |||||||| Sbjct 57299 TCGCACGT-TCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCA 57241 Query 159705 GTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCG 159764 |||||||| || || | || |||||||| ||||| || ||||||||||| || ||| Sbjct 57240 GTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCG 57181 Query 159765 TCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGG 159824 ||||| || ||||| || || | || | || ||| | ||||| || ||||||||| Sbjct 57180 AGTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGG 57121 Query 159825 ACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGT 159884 || || ||||| || ||||||||||| ||||||||| | ||||| | || || || || Sbjct 57120 ACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGT 57061 Query 159885 GCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACC 159944 || || ||||||| || ||||| || || || | ||||||||| || ||||| || Sbjct 57060 GCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACA 57001 Query 159945 TTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGC 160004 ||| |||||| || ||||||||| || || ||||| ||| | || || ||||| ||| Sbjct 57000 TTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGC 56941 Query 160005 TTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATG 160064 || ||||| || || |||||| | ||||||||||| || || ||| | |||||||| ||| Sbjct 56940 TTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATG 56881 Query 160065 TTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTT 160124 || ||||| || || | ||| | ||||| || |||| | | ||| | || | Sbjct 56880 TTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTA 56821 Query 160125 AATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTT 160184 ||| | ||||| | ||||||||| ||||| || | || || ||||| ||||||||| Sbjct 56820 AATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTT 56761 Query 160185 GAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCT 160244 || || || || || ||||| || || ||||| ||||| | ||||| ||| |||| || Sbjct 56760 GAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCT 56701 Query 160245 GCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCC 160304 ||||| || |||||||| || | |||||||| || || || || | || ||||| Sbjct 56700 CAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCT 56641 Query 160305 CTTTAATA 160312 |||||||| Sbjct 56640 CTTTAATA 56633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548371836349680