Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_021559.1
Length=179063
Score E
Sequences producing significant alignments: (Bits) Value
seq243 686 0.0
seq260 417 9e-112
>seq243
Length=18593
Score = 686 bits (760), Expect = 0.0
Identities = 745/986 (76%), Gaps = 4/986 (0%)
Strand=Plus/Minus
Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294
|||||||||||||||||| |||||| || ||| | || ||||||||||||||||| |
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354
|||||||| | |||| || || || ||| ||| | || || |||||||||||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCG 3727
Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414
||||| ||||| || || || | |||||||| | ||||| || ||||||| || |||
Sbjct 3726 CCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAAC 3667
Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474
|| || ||||| |||||||| ||| ||||||||||||| || ||||| || || || |||
Sbjct 3666 ATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAATC 3607
Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534
|||||||| || || | ||||| ||||| ||||| || || |||||||| | | |
Sbjct 3606 TGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGTA 3547
Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594
| ||||| | | ||||| | | | ||||||||| | | |||||| |||| | | |
Sbjct 3546 TGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCGT 3487
Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654
|||| ||| | || ||||| || || || ||||||||||| ||||||| |||
Sbjct 3486 TTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCT 3427
Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714
|||||| || | |||||| | || || |||||||||||||||||||||||| |||||||
Sbjct 3426 GTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATT 3367
Query 72715 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 72774
|| ||||| ||||| || ||| |||| |||||||||||||| ||||| ||||||||||
Sbjct 3366 TCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCCA 3307
Query 72775 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT--AGTCTCTTCAGTGCAATGCACG 72832
||||||||| ||||| || ||| | || |||||| | | | ||| ||||||||| |
Sbjct 3306 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTC--TGCAATGCATG 3249
Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACG 72892
||||| | || ||||| ||| |||| | || ||||| || ||||| | ||| |
Sbjct 3248 GTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTG 3189
Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952
| || || ||||||||| |||||||||| || ||||| || |||||||||||||| ||||
Sbjct 3188 GTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCG 3129
Query 72953 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 73012
|| | ||||| ||||| || ||||| || || ||||||||||| |||||||||||| | |
Sbjct 3128 GTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAG 3069
Query 73013 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCA 73072
||| | || || || || | ||||| || | | ||||| | || |||||||| |
Sbjct 3068 CTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTA 3009
Query 73073 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 73132
|| | || || |||||||| ||||||||||| || ||| || | || || | |
Sbjct 3008 ACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACA 2949
Query 73133 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 73192
| |||| ||| || ||||| | || || ||||| |||||||||||||||||| | ||||
Sbjct 2948 CTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 2889
Query 73193 CACACAACTTCCCACTAGACCTAGCA 73218
||||||| ||||||||||| |||||
Sbjct 2888 CACACAATTTCCCACTAGATTTAGCA 2863
>seq260
Length=66046
Score = 417 bits (462), Expect = 9e-112
Identities = 719/1042 (69%), Gaps = 23/1042 (2%)
Strand=Plus/Minus
Query 73361 TGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 73420
|||||||| | ||||||| ||| | | |||||||| ||||| || || |||||
Sbjct 57654 TGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGGTCA 57595
Query 73421 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 73480
||||| ||| | || ||| ||| || ||||| | || |||||||| ||||| ||
Sbjct 57594 GGTCTATTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAACAACA 57535
Query 73481 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTT 73540
|| || | || ||||| || ||||| | || | || ||| | ||||| || |||
Sbjct 57534 TTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAACTTT 57475
Query 73541 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGG 73600
||||||| || || || ||||| | | || |||||| ||| | |||| || | |||
Sbjct 57474 TTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTTATGG 57415
Query 73601 GGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 73660
|| || || || ||||| ||| || || |||| ||| | || || || |||| |||
Sbjct 57414 GGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACATTT 57355
Query 73661 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 73720
|| ||| |||| || | ||| | || || || |||||| | || || || || |||
Sbjct 57354 GTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAATCGCA 57295
Query 73721 GGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTC 73780
| ||| || || || || |||||| | || ||||| ||| ||| ||||| ||
Sbjct 57294 CGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGTTTTT 57235
Query 73781 ACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTC 73840
| ||| |||| || || ||||| || ||||||||| || ||||| ||
Sbjct 57234 GTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAGTTTT 57175
Query 73841 GGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTT 73900
||||| ||||| || || |||| |||||||||| | || ||||||||||| ||| |
Sbjct 57174 GGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGACTTTG 57115
Query 73901 AATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATA 73960
||||| ||||||||||||||||| || ||| | || || | || | || ||||| ||
Sbjct 57114 AATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGCAATT 57055
Query 73961 CATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAG 74020
||||| ||||||||| | || || | | |||||| || | | |
Sbjct 57054 CATGGCGCAACAGTAGAAAATACTCTATTTGAAGA---------------TG--GCGACG 57012
Query 74021 ATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATG 74080
| ||| ||| |||| | || || |||| || || | |||||| |||||| | |
Sbjct 57011 GTGCAA---ACACATTTC-GTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTT 56956
Query 74081 ATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTC 74140
| || || || | || |||||||| ||||| ||| |||| ||||| || ||| | |
Sbjct 56955 GTAACAGCAAATCGCTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGG 56896
Query 74141 TTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATC 74200
||||| ||| ||||||| || ||||| || | ||| | ||||| || | ||| |
Sbjct 56895 TTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTA 56836
Query 74201 GTAGGTCTAGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGC 74259
||||| ||||| |||| ||| | |||| ||| || || || ||||| || | || ||
Sbjct 56835 GTAGGCTTAGCA-TTAAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGC 56777
Query 74260 AGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAG 74319
||||||||||| |||||||| || || || || || |||||| | ||||||||||| |
Sbjct 56776 TGAAGACCCAGAATTTGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCG 56717
Query 74320 AGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTT 74379
|| |||||| | || ||||| || ||||| || || || |||||||| || || ||
Sbjct 56716 TGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTT 56657
Query 74380 GCCACGAGGCAACGCACTATAA 74401
||||| || ||||| || |||
Sbjct 56656 ACCACGTGGAAACGCTCTTTAA 56635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572870921815920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |