Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq133 145 7e-30 seq149 87.8 2e-12 >seq133 Length=726431 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || |||||||||||||| || || || Sbjct 170917 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCC 170858 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || |||||||| || Sbjct 170857 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 170798 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||| ||||| | | | |||| || || ||| Sbjct 170797 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 170738 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| ||||| |||| ||||||| ||| Sbjct 170737 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 170690 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || || || ||||| || ||||||||||||| || Sbjct 171061 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTTGCCGGCAAG 171002 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| | | | |||| || || ||||| || ||||| || || || ||| Sbjct 171001 CAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCAC 170942 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| |||| ||||||| ||| Sbjct 170941 CTGGTGCTGCGCCTGCGCGGCGGC 170918 >seq149 Length=203194 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| || || || || ||||| || || || ||||| || |||||||||| || || Sbjct 6991 AAGATTCAGGATAAGGAGGGAATCCCCCCGGACCAACAGCGCCTGATCTTTGCGGGCAAG 6932 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| | | | |||| || || ||||| || ||||| || || || ||| Sbjct 6931 CAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 6872 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 |||| |||| |||| || || Sbjct 6871 CTGGTCCTGCGCCTGCGTGGTGG 6849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895496728720