Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_023584.1
Length=170438
Score E
Sequences producing significant alignments: (Bits) Value
seq243 672 0.0
seq260 576 1e-159
>seq243
Length=18593
Score = 672 bits (744), Expect = 0.0
Identities = 738/979 (75%), Gaps = 2/979 (0%)
Strand=Plus/Minus
Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110
|| || ||||||||||| ||| | ||||| || |||||||||||||| ||||| |||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTC-ATTGTTGCATTCGTAGCAGCACC 157169
||||| || ||||| | ||||||||| ||| || ||| | || || | || || ||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728
Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229
|| || ||||| || ||||||||||||||||| | ||||| | | ||||| || ||
Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668
Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289
||| || ||||| || || || || ||||||||||||| ||| | || || ||||| ||
Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608
Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349
||||||||| || || ||||| || ||| | || || ||||| |||| |||||| | ||
Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548
Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409
| |||||| | | || || | | | || ||||| ||||| |||||| | |||| |||
Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488
Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469
|||||||||||| || |||||| ||||| || || ||||| || ||||| || | |||
Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428
Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529
|||||| | | ||||| | || |||||||| ||||| |||| |||||| | |||||
Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368
Query 157530 CTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCC 157589
||||||||||| || | |||| |||| ||||| ||||| || || ||| | ||||| ||
Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308
Query 157590 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649
||||| ||||| || |||||||| ||||| ||||| || || || ||||| ||||| ||
Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248
Query 157650 AAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAACTATGG 157709
| || ||||| || | |||||||||||||||||| || || ||| |||
Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188
Query 157710 TTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGG 157769
|||||| ||||| ||| ||||||| || ||||||||||| ||||| || || || |||||
Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128
Query 157770 TCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGC 157829
||| | || ||||||||||| || || || ||| | | | ||||||||| | ||
Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068
Query 157830 CGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 157889
|| ||||| ||||| || || ||||| ||||| | || | || |||||||| ||
Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008
Query 157890 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 157949
| | || ||||||||||| ||||| || | ||||| || |||||||| | |||||
Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948
Query 157950 CTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158009
||||| ||| | | ||||| ||| |||||||||||||||||||||||| ||||| ||
Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888
Query 158010 ACACAACTTCCCACTGGAT 158028
|||||| |||||||| |||
Sbjct 2887 ACACAATTTCCCACTAGAT 2869
>seq260
Length=66046
Score = 576 bits (638), Expect = 1e-159
Identities = 744/1019 (73%), Gaps = 6/1019 (1%)
Strand=Plus/Minus
Query 158769 GGATGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGG 158828
|| |||||||| || | || ||||||||| || |||||||| || ||| ||||||||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 158829 TCTGGACTTCTTCTTCTACCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCAC 158887
|| || || || || | ||| ||||| ||| | || | || |||||| | ||||| ||
Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539
Query 158888 GACTTTCGCTACGAGCT-GGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAA 158946
|| || | || | || ||||||| ||||| | |||||||| ||| | |||||| |
Sbjct 57538 AACATTTG-TAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCA 57480
Query 158947 ACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTC 159006
||||| | || | || ||||| || || ||| || |||||| |||||| | | ||
Sbjct 57479 ACTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTT 57420
Query 159007 TCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGA 159066
| |||||||| || |||||||| ||||| | ||| ||||||||| || || ||||
Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360
Query 159067 ATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAAC 159126
||||| || || |||||||| ||| | ||||||| || |||||||| || || |||
Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300
Query 159127 TGGCACGTCTCA-TCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCT 159185
| |||||| ||| | || || || || || || ||||| || |||| ||||||||
Sbjct 57299 TCGCACGT-TCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCA 57241
Query 159186 GTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCG 159245
|||||||| || || | || |||||| | ||||| || ||||||||||| || |||
Sbjct 57240 GTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCG 57181
Query 159246 TCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGG 159305
||||| || || || || ||| | || | | ||| | ||||| |||||||| |||
Sbjct 57180 AGTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGG 57121
Query 159306 ACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCT 159365
|| | || || || ||||||||||| ||||||||| | ||||| | || ||||| | |
Sbjct 57120 ACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGT 57061
Query 159366 GCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACC 159425
|| |||||||| | ||||| |||||||| ||| || ||||| || ||||||||
Sbjct 57060 GCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACA 57001
Query 159426 TTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGC 159485
||| |||||| || ||||||||| || || ||||||||| | || || ||||| |||
Sbjct 57000 TTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGC 56941
Query 159486 TTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATG 159545
|| ||||| || || ||||| | ||||||||||| || || ||| | ||||||||||||
Sbjct 56940 TTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATG 56881
Query 159546 TTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTC 159605
|| ||||| || || | ||| ||||||| | |||| | | || | || |
Sbjct 56880 TTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTA 56821
Query 159606 AATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTT 159665
||| | ||||| | ||||||||| ||||| || | || || ||||| |||||||||
Sbjct 56820 AATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTT 56761
Query 159666 GAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCT 159725
||||| || || || || || |||||| |||||||||| | ||||||||| |||| ||
Sbjct 56760 GAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCT 56701
Query 159726 GCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784
||||| || |||||||| || | |||||||| || ||| ||||| | || |||||
Sbjct 56700 CAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 56642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545271050845920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |