Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq243 672 0.0 seq260 576 1e-159 >seq243 Length=18593 Score = 672 bits (744), Expect = 0.0 Identities = 738/979 (75%), Gaps = 2/979 (0%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 || || ||||||||||| ||| | ||||| || |||||||||||||| ||||| ||| Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTC-ATTGTTGCATTCGTAGCAGCACC 157169 ||||| || ||||| | ||||||||| ||| || ||| | || || | || || || Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 || || ||||| || ||||||||||||||||| | ||||| | | ||||| || || Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 ||| || ||||| || || || || ||||||||||||| ||| | || || ||||| || Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 ||||||||| || || ||||| || ||| | || || ||||| |||| |||||| | || Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | |||||| | | || || | | | || ||||| ||||| |||||| | |||| ||| Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488 Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 |||||||||||| || |||||| ||||| || || ||||| || ||||| || | ||| Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428 Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529 |||||| | | ||||| | || |||||||| ||||| |||| |||||| | ||||| Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368 Query 157530 CTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCC 157589 ||||||||||| || | |||| |||| ||||| ||||| || || ||| | ||||| || Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308 Query 157590 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649 ||||| ||||| || |||||||| ||||| ||||| || || || ||||| ||||| || Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248 Query 157650 AAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAACTATGG 157709 | || ||||| || | |||||||||||||||||| || || ||| ||| Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188 Query 157710 TTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGG 157769 |||||| ||||| ||| ||||||| || ||||||||||| ||||| || || || ||||| Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128 Query 157770 TCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGC 157829 ||| | || ||||||||||| || || || ||| | | | ||||||||| | || Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068 Query 157830 CGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 157889 || ||||| ||||| || || ||||| ||||| | || | || |||||||| || Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008 Query 157890 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 157949 | | || ||||||||||| ||||| || | ||||| || |||||||| | ||||| Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948 Query 157950 CTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158009 ||||| ||| | | ||||| ||| |||||||||||||||||||||||| ||||| || Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888 Query 158010 ACACAACTTCCCACTGGAT 158028 |||||| |||||||| ||| Sbjct 2887 ACACAATTTCCCACTAGAT 2869 >seq260 Length=66046 Score = 576 bits (638), Expect = 1e-159 Identities = 744/1019 (73%), Gaps = 6/1019 (1%) Strand=Plus/Minus Query 158769 GGATGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGG 158828 || |||||||| || | || ||||||||| || |||||||| || ||| |||||||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 158829 TCTGGACTTCTTCTTCTACCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCAC 158887 || || || || || | ||| ||||| ||| | || | || |||||| | ||||| || Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 158888 GACTTTCGCTACGAGCT-GGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAA 158946 || || | || | || ||||||| ||||| | |||||||| ||| | |||||| | Sbjct 57538 AACATTTG-TAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCA 57480 Query 158947 ACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTC 159006 ||||| | || | || ||||| || || ||| || |||||| |||||| | | || Sbjct 57479 ACTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTT 57420 Query 159007 TCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGA 159066 | |||||||| || |||||||| ||||| | ||| ||||||||| || || |||| Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360 Query 159067 ATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAAC 159126 ||||| || || |||||||| ||| | ||||||| || |||||||| || || ||| Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300 Query 159127 TGGCACGTCTCA-TCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCT 159185 | |||||| ||| | || || || || || || ||||| || |||| |||||||| Sbjct 57299 TCGCACGT-TCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCA 57241 Query 159186 GTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCG 159245 |||||||| || || | || |||||| | ||||| || ||||||||||| || ||| Sbjct 57240 GTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCG 57181 Query 159246 TCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGG 159305 ||||| || || || || ||| | || | | ||| | ||||| |||||||| ||| Sbjct 57180 AGTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGG 57121 Query 159306 ACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCT 159365 || | || || || ||||||||||| ||||||||| | ||||| | || ||||| | | Sbjct 57120 ACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGT 57061 Query 159366 GCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACC 159425 || |||||||| | ||||| |||||||| ||| || ||||| || |||||||| Sbjct 57060 GCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACA 57001 Query 159426 TTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGC 159485 ||| |||||| || ||||||||| || || ||||||||| | || || ||||| ||| Sbjct 57000 TTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGC 56941 Query 159486 TTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATG 159545 || ||||| || || ||||| | ||||||||||| || || ||| | |||||||||||| Sbjct 56940 TTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATG 56881 Query 159546 TTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTC 159605 || ||||| || || | ||| ||||||| | |||| | | || | || | Sbjct 56880 TTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTA 56821 Query 159606 AATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTT 159665 ||| | ||||| | ||||||||| ||||| || | || || ||||| ||||||||| Sbjct 56820 AATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTT 56761 Query 159666 GAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCT 159725 ||||| || || || || || |||||| |||||||||| | ||||||||| |||| || Sbjct 56760 GAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCT 56701 Query 159726 GCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 ||||| || |||||||| || | |||||||| || ||| ||||| | || ||||| Sbjct 56700 CAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 56642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545271050845920