Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq43 170 2e-37 seq133 152 5e-32 seq99 145 7e-30 seq90 127 2e-24 >seq43 Length=247289 Score = 170 bits (188), Expect = 2e-37 Identities = 243/338 (72%), Gaps = 7/338 (2%) Strand=Plus/Plus Query 149243 GAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTGCCGCC 149302 ||| ||||| || ||||| ||||| | ||||| || | |||||||||||||||||||| Sbjct 177498 GAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGCCGCC 177557 Query 149303 ---CTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACT 149359 |||||| |||| |||| | ||| ||| || || || | ||| || | ||||| | Sbjct 177558 TCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTT 177617 Query 149360 GGCAGTGCCGTTAGTAGAGCTAATGC--GACTGCCGCGCGCTCGCACTTTGTGCACGTTG 149417 | | |||||| || || ||| ||| ||| | || || | ||||||| | | Sbjct 177618 GCTGGAGCCGTTGGTGCCGCGGATGTAGGACC-CCGTG-GCACGGATGTTGTGCATGCTC 177675 Query 149418 ACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATG 149477 | |||||||||||| || |||| |||||||||||||| || ||||| ||||||| Sbjct 177676 AGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGATG 177735 Query 149478 CCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGC 149537 ||||||||||||||| |||||||| || || ||||| ||| ||| || || | Sbjct 177736 CCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGCGGGGG 177795 Query 149538 GTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAA 149575 |||||||| ||||| ||||| |||||| || || Sbjct 177796 GTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833 Score = 149 bits (164), Expect = 6e-31 Identities = 289/421 (69%), Gaps = 17/421 (4%) Strand=Plus/Plus Query 147935 GTAGGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGC 147994 || ||| |||| | |||||||| |||||||| |||||||| || ||| | ||| || Sbjct 174942 GTCGGCCGCGGCGCGGGTGCGCAGGTAGTACATCCCCGTCTTCAGCCCCTTCTTCCAGGC 175001 Query 147995 GTAGTCGTGCACCGACGACATGAGCGTGT---ACGTCGGGTGCGGCACAAACAGATTAAA 148051 |||| ||| | || | ||||| || | | |||| || || || || || Sbjct 175002 GTAGAAGTGGAGGGAGG---TGAGCTTGCCAAAGTTGGGGTCCGACATGTGCACGTTGAA 175058 Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGT---CGCTT 148108 |||||| ||| || ||| ||||||| || || |||||||| || | || |||| Sbjct 175059 GGACTGGGACTGATCGATGTACGCGCCGCGATCCGCGGCCATGTCCACCAGCGTGCGCTG 175118 Query 148109 TATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168 ||| |||||||| |||||||||||||| ||||| ||||| ||| || | Sbjct 175119 ---CTTGATCTCCCACACCGTCTTGTACAGCGCCTTGAGCGCGTCGGGGATG---TCCAG 175172 Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGT-ATAGGT 148227 || ||||||||| ||| | ||| | | || || ||| ||| |||| | ||| Sbjct 175173 GCCCTGCACCGACCCGTTGCCCGCCACCAGCTCGTTCTTCATGTCG-CCGTCCCACAGGC 175231 Query 148228 TGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCA 148287 || | | ||||| | | ||| | ||| ||||||||| |||||||||| |||| Sbjct 175232 CCAGGCGGGTGAGGTCGTGCAGCAGGTGCTGGTTCACCACCGTGAACTCGCCGGACAGCA 175291 Query 148288 CGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCT 148347 |||| |||| || | ||||||||| |||| || || ||||||||||||||| |||| Sbjct 175292 CGCGGCGCACGTAGATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGGATCT 175351 Query 148348 G 148348 | Sbjct 175352 G 175352 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 148883 GCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGC 148942 |||||| ||||||| ||||| ||||| ||||| || ||||||||| |||||||| Sbjct 176630 GCACAGGTTGCTGCTCTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGGAGTTGCACGA 176689 Query 148943 GTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA 148989 |||||||||||||||| | || || || |||||||||| |||| Sbjct 176690 GTCCTTGTACAGCATGAAGGGGTTCCCCGTCTCCACCTGCGCCTCCA 176736 >seq133 Length=726431 Score = 152 bits (168), Expect = 5e-32 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| |||||||||||||||||| Sbjct 170720 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 170779 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||||||||||||||| |||||||| |||||| ||| Sbjct 170780 GGCAAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 170839 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||||| || |||||| |||| || | ||| ||||| ||||| || Sbjct 170840 CACATTGTCAATGGTGTCGGAGGACTCCACTTCGAGCGTAATGGTCTTGCCCGTCAGCGT 170899 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 170900 CTTGACGAAGATCTGCATG 170918 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| |||||||||||||||||| Sbjct 170948 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 171007 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 || | || || ||||| ||||| || |||||||| |||||||| |||||| Sbjct 171008 GGCAAAGATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 171061 >seq99 Length=333813 Score = 145 bits (160), Expect = 7e-30 Identities = 162/213 (76%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| |||||||||||||| ||||| || || ||||||||| || ||| Sbjct 93408 AGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTC 93349 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || || ||||||| || | |||| | || | |||| | ||| ||| || ||| Sbjct 93348 AGCCCCGGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAG 93289 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCT-TGCT 120818 || | |||||||||| |||||||||||||| ||||||||| || |||| ||| ||| Sbjct 93288 AATATGCCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGCGAA--TCGC--TCTGCGCT 93233 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTT 120851 ||||||||||| ||||| |||||||| || Sbjct 93232 CGAGATCCACTTCAGCGCCCAGTCGGCCTTCTT 93200 >seq90 Length=671320 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| |||||||||||||| || || || || |||||||| || || Sbjct 288506 AGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTG 288447 Query 120700 AGGCCGGGCATGA--TGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAA 120757 ||||||||||||| |||| | |||||| || | ||||| |||| ||| || | Sbjct 288446 AGGCCGGGCATGAGGTGCC--GCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGA 288389 Query 120758 AGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGC 120817 ||| | |||||||||| ||||||||| |||| |||| || || | | | || Sbjct 288388 AGAGGATGCCCTCCACGCAGGCAAAGGCCACCAGCCGCTGCGCGAAGCT---GGACCCGC 288332 Query 120818 TGTCGATCCACTTCATGGCCCACTCGGCCTTTTT 120851 || |||||||| | | ||||||||| |||||||| Sbjct 288331 TGCCGATCCACCTGAGGGCCCACTCCGCCTTTTT 288298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418540007760