Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq43 170 2e-37
seq133 152 5e-32
seq99 145 7e-30
seq90 127 2e-24
>seq43
Length=247289
Score = 170 bits (188), Expect = 2e-37
Identities = 243/338 (72%), Gaps = 7/338 (2%)
Strand=Plus/Plus
Query 149243 GAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTGCCGCC 149302
||| ||||| || ||||| ||||| | ||||| || | ||||||||||||||||||||
Sbjct 177498 GAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGCCGCC 177557
Query 149303 ---CTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACT 149359
|||||| |||| |||| | ||| ||| || || || | ||| || | ||||| |
Sbjct 177558 TCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTT 177617
Query 149360 GGCAGTGCCGTTAGTAGAGCTAATGC--GACTGCCGCGCGCTCGCACTTTGTGCACGTTG 149417
| | |||||| || || ||| ||| ||| | || || | ||||||| | |
Sbjct 177618 GCTGGAGCCGTTGGTGCCGCGGATGTAGGACC-CCGTG-GCACGGATGTTGTGCATGCTC 177675
Query 149418 ACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATG 149477
| |||||||||||| || |||| |||||||||||||| || ||||| |||||||
Sbjct 177676 AGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGATG 177735
Query 149478 CCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGC 149537
||||||||||||||| |||||||| || || ||||| ||| ||| || || |
Sbjct 177736 CCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGCGGGGG 177795
Query 149538 GTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAA 149575
|||||||| ||||| ||||| |||||| || ||
Sbjct 177796 GTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833
Score = 149 bits (164), Expect = 6e-31
Identities = 289/421 (69%), Gaps = 17/421 (4%)
Strand=Plus/Plus
Query 147935 GTAGGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGC 147994
|| ||| |||| | |||||||| |||||||| |||||||| || ||| | ||| ||
Sbjct 174942 GTCGGCCGCGGCGCGGGTGCGCAGGTAGTACATCCCCGTCTTCAGCCCCTTCTTCCAGGC 175001
Query 147995 GTAGTCGTGCACCGACGACATGAGCGTGT---ACGTCGGGTGCGGCACAAACAGATTAAA 148051
|||| ||| | || | ||||| || | | |||| || || || || ||
Sbjct 175002 GTAGAAGTGGAGGGAGG---TGAGCTTGCCAAAGTTGGGGTCCGACATGTGCACGTTGAA 175058
Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGT---CGCTT 148108
|||||| ||| || ||| ||||||| || || |||||||| || | || ||||
Sbjct 175059 GGACTGGGACTGATCGATGTACGCGCCGCGATCCGCGGCCATGTCCACCAGCGTGCGCTG 175118
Query 148109 TATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168
||| |||||||| |||||||||||||| ||||| ||||| ||| || |
Sbjct 175119 ---CTTGATCTCCCACACCGTCTTGTACAGCGCCTTGAGCGCGTCGGGGATG---TCCAG 175172
Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGT-ATAGGT 148227
|| ||||||||| ||| | ||| | | || || ||| ||| |||| | |||
Sbjct 175173 GCCCTGCACCGACCCGTTGCCCGCCACCAGCTCGTTCTTCATGTCG-CCGTCCCACAGGC 175231
Query 148228 TGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCA 148287
|| | | ||||| | | ||| | ||| ||||||||| |||||||||| ||||
Sbjct 175232 CCAGGCGGGTGAGGTCGTGCAGCAGGTGCTGGTTCACCACCGTGAACTCGCCGGACAGCA 175291
Query 148288 CGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCT 148347
|||| |||| || | ||||||||| |||| || || ||||||||||||||| ||||
Sbjct 175292 CGCGGCGCACGTAGATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTGCCCAGGATCT 175351
Query 148348 G 148348
|
Sbjct 175352 G 175352
Score = 89.7 bits (98), Expect = 5e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 148883 GCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGC 148942
|||||| ||||||| ||||| ||||| ||||| || ||||||||| ||||||||
Sbjct 176630 GCACAGGTTGCTGCTCTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGGAGTTGCACGA 176689
Query 148943 GTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA 148989
|||||||||||||||| | || || || |||||||||| ||||
Sbjct 176690 GTCCTTGTACAGCATGAAGGGGTTCCCCGTCTCCACCTGCGCCTCCA 176736
>seq133
Length=726431
Score = 152 bits (168), Expect = 5e-32
Identities = 153/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| || ||| ||||||||||||||||||
Sbjct 170720 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 170779
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || || ||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 170780 GGCAAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 170839
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | |||| ||||||| || |||||| |||| || | ||| ||||| ||||| ||
Sbjct 170840 CACATTGTCAATGGTGTCGGAGGACTCCACTTCGAGCGTAATGGTCTTGCCCGTCAGCGT 170899
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 170900 CTTGACGAAGATCTGCATG 170918
Score = 89.7 bits (98), Expect = 5e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| || ||| ||||||||||||||||||
Sbjct 170948 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 171007
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|| | || || ||||| ||||| || |||||||| |||||||| ||||||
Sbjct 171008 GGCAAAGATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 171061
>seq99
Length=333813
Score = 145 bits (160), Expect = 7e-30
Identities = 162/213 (76%), Gaps = 5/213 (2%)
Strand=Plus/Minus
Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699
||||| |||||||| |||||||||||||| ||||| || || ||||||||| || |||
Sbjct 93408 AGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTC 93349
Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759
|| || ||||||| || | |||| | || | |||| | ||| ||| || |||
Sbjct 93348 AGCCCCGGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAG 93289
Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCT-TGCT 120818
|| | |||||||||| |||||||||||||| ||||||||| || |||| ||| |||
Sbjct 93288 AATATGCCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGCGAA--TCGC--TCTGCGCT 93233
Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTT 120851
||||||||||| ||||| |||||||| ||
Sbjct 93232 CGAGATCCACTTCAGCGCCCAGTCGGCCTTCTT 93200
>seq90
Length=671320
Score = 127 bits (140), Expect = 2e-24
Identities = 158/214 (74%), Gaps = 7/214 (3%)
Strand=Plus/Minus
Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699
||||| |||||||| |||||||||||||| || || || || |||||||| || ||
Sbjct 288506 AGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTG 288447
Query 120700 AGGCCGGGCATGA--TGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAA 120757
||||||||||||| |||| | |||||| || | ||||| |||| ||| || |
Sbjct 288446 AGGCCGGGCATGAGGTGCC--GCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGA 288389
Query 120758 AGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGC 120817
||| | |||||||||| ||||||||| |||| |||| || || | | | ||
Sbjct 288388 AGAGGATGCCCTCCACGCAGGCAAAGGCCACCAGCCGCTGCGCGAAGCT---GGACCCGC 288332
Query 120818 TGTCGATCCACTTCATGGCCCACTCGGCCTTTTT 120851
|| |||||||| | | ||||||||| ||||||||
Sbjct 288331 TGCCGATCCACCTGAGGGCCCACTCCGCCTTTTT 288298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483418540007760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |