Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq243 574 1e-159
>seq243
Length=18593
Score = 574 bits (636), Expect = 1e-159
Identities = 704/953 (74%), Gaps = 6/953 (1%)
Strand=Plus/Minus
Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591
||||| | |||||||| |||||||| || ||||| || | | |||| ||
Sbjct 3819 AACCGCTTATATGTTGGTTGGTTTGGTGTTCTTATGATCCCTACATTATTAACAGCAACT 3760
Query 19592 ATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650
| ||| || ||||| || || || || ||||| ||||| || |||||||| || |||||
Sbjct 3759 A-CTGTTTTTATTATCGCTTTTATCGCTGCTCCGCCAGTAGATATTGATGGTATTCGCGA 3701
Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710
||| ||||| ||| | || |||||||| ||||| || || || || || || || |
Sbjct 3700 ACCAGTATCAGGTTCATTACTATATGGAAATAACATAATTTCTGGCGCTGTAGTACCAAC 3641
Query 19711 CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATG 19770
|| || || || |||| || |||||||| ||||||||| ||| ||||| |||||
Sbjct 3640 TTCAAACGCAATTGGTTTACATTTTTACCCAATCTGGGAAGCTGCTTCTCTTGACGAATG 3581
Query 19771 GCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGC 19830
| | || || || ||||| | ||||||| | || | ||||| || | || || | | |
Sbjct 3580 GTTATATAATGGTGGACCTTACCAACTTATCGTATGTCACTTTTTCTTAGGAATTTGTTC 3521
Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATC-GACTAGGAATGAGGCCTTGGATTTGTG 19889
|||||||| || || |||||| ||| || || | |||| ||| | || ||||| |
Sbjct 3520 ATACATGGGTCGTGAATGGGAA-TTATCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAG 3462
Query 19890 TTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTC 19949
|||| || || || || ||||| || || |||| || || | | || || |||| |
Sbjct 3461 TTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCTGTATTCATTATTTATCCAATTGGAC 3402
Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009
| ||| ||||| |||| |||||| || ||||| || ||||| ||||| | ||| | |
Sbjct 3401 AAGGTTCATTCTCTGATGGTATGCCATTAGGTATTTCTGGTACTTTCAATTTTATGATCG 3342
Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069
|||||||||| |||||||||||| | |||||||| ||||| ||||||||||| |||||||
Sbjct 3341 TATTCCAAGCAGAACATAACATTTTAATGCACCCATTCCATATGCTTGGTGTTGCTGGTG 3282
Query 20070 TATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC 20129
|||| ||||| ||| |||| ||| ||||| ||||| | || || || || | | |
Sbjct 3281 TATTTGGTGGTTCATTATTTTCTGCAATGCATGGTTCATTAGTAACTTCTTCTTTAATTC 3222
Query 20130 GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGA 20189
|||| || |||||| | ||| | ||| ||||||||| || || ||| ||||||| |
Sbjct 3221 GTGAAACAACTGAAAACGAATCTGCTAACGTTGGTTACAAATTCGGACAACAAGAAGAAA 3162
Query 20190 CCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTT 20249
| || ||||||||||| |||||||| || || || ||||| || ||||||||||| ||||
Sbjct 3161 CTTACAACATCGTAGCTGCTCATGGATATTTCGGTCGTTTAATTTTCCAATACGCATCTT 3102
Query 20250 TCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGT 20309
| || || |||||| ||||||||||| | ||||| ||||| || || || |||||||
Sbjct 3101 TTAATAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGT 3042
Query 20310 TCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGT 20369
| |||| || || |||| || ||||| ||||| | || ||||||||||||||||| |
Sbjct 3041 TTACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAATGGTTTCAACTTTAACCAAT 2982
Query 20370 CCCTTCTCGA-CAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCT 20428
| | | || |||| |||||||| ||| | ||||||||||| ||| | || ||||||
Sbjct 2981 CAGTAGTTGATTCACAA-GGTCGTGTTATTAACACTTGGGCTGATATTATTAACCGTGCT 2923
Query 20429 AATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGA 20481
||||| || | || || ||||||||||| ||||| || || |||||||| ||
Sbjct 2922 AATCTTGGTATGGAAGTTATGCATGAACGTAATGCACACAATTTCCCACTAGA 2870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148828139014092
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |