Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq243 574 1e-159 >seq243 Length=18593 Score = 574 bits (636), Expect = 1e-159 Identities = 704/953 (74%), Gaps = 6/953 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||| | |||||||| |||||||| || ||||| || | | |||| || Sbjct 3819 AACCGCTTATATGTTGGTTGGTTTGGTGTTCTTATGATCCCTACATTATTAACAGCAACT 3760 Query 19592 ATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 | ||| || ||||| || || || || ||||| ||||| || |||||||| || ||||| Sbjct 3759 A-CTGTTTTTATTATCGCTTTTATCGCTGCTCCGCCAGTAGATATTGATGGTATTCGCGA 3701 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| ||||| ||| | || |||||||| ||||| || || || || || || || | Sbjct 3700 ACCAGTATCAGGTTCATTACTATATGGAAATAACATAATTTCTGGCGCTGTAGTACCAAC 3641 Query 19711 CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATG 19770 || || || || |||| || |||||||| ||||||||| ||| ||||| ||||| Sbjct 3640 TTCAAACGCAATTGGTTTACATTTTTACCCAATCTGGGAAGCTGCTTCTCTTGACGAATG 3581 Query 19771 GCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGC 19830 | | || || || ||||| | ||||||| | || | ||||| || | || || | | | Sbjct 3580 GTTATATAATGGTGGACCTTACCAACTTATCGTATGTCACTTTTTCTTAGGAATTTGTTC 3521 Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATC-GACTAGGAATGAGGCCTTGGATTTGTG 19889 |||||||| || || |||||| ||| || || | |||| ||| | || ||||| | Sbjct 3520 ATACATGGGTCGTGAATGGGAA-TTATCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAG 3462 Query 19890 TTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTC 19949 |||| || || || || ||||| || || |||| || || | | || || |||| | Sbjct 3461 TTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCTGTATTCATTATTTATCCAATTGGAC 3402 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | ||| ||||| |||| |||||| || ||||| || ||||| ||||| | ||| | | Sbjct 3401 AAGGTTCATTCTCTGATGGTATGCCATTAGGTATTTCTGGTACTTTCAATTTTATGATCG 3342 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069 |||||||||| |||||||||||| | |||||||| ||||| ||||||||||| ||||||| Sbjct 3341 TATTCCAAGCAGAACATAACATTTTAATGCACCCATTCCATATGCTTGGTGTTGCTGGTG 3282 Query 20070 TATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC 20129 |||| ||||| ||| |||| ||| ||||| ||||| | || || || || | | | Sbjct 3281 TATTTGGTGGTTCATTATTTTCTGCAATGCATGGTTCATTAGTAACTTCTTCTTTAATTC 3222 Query 20130 GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGA 20189 |||| || |||||| | ||| | ||| ||||||||| || || ||| ||||||| | Sbjct 3221 GTGAAACAACTGAAAACGAATCTGCTAACGTTGGTTACAAATTCGGACAACAAGAAGAAA 3162 Query 20190 CCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTT 20249 | || ||||||||||| |||||||| || || || ||||| || ||||||||||| |||| Sbjct 3161 CTTACAACATCGTAGCTGCTCATGGATATTTCGGTCGTTTAATTTTCCAATACGCATCTT 3102 Query 20250 TCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGT 20309 | || || |||||| ||||||||||| | ||||| ||||| || || || ||||||| Sbjct 3101 TTAATAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGT 3042 Query 20310 TCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGT 20369 | |||| || || |||| || ||||| ||||| | || ||||||||||||||||| | Sbjct 3041 TTACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAATGGTTTCAACTTTAACCAAT 2982 Query 20370 CCCTTCTCGA-CAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCT 20428 | | | || |||| |||||||| ||| | ||||||||||| ||| | || |||||| Sbjct 2981 CAGTAGTTGATTCACAA-GGTCGTGTTATTAACACTTGGGCTGATATTATTAACCGTGCT 2923 Query 20429 AATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGA 20481 ||||| || | || || ||||||||||| ||||| || || |||||||| || Sbjct 2922 AATCTTGGTATGGAAGTTATGCATGAACGTAATGCACACAATTTCCCACTAGA 2870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828139014092