Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq243 540 3e-149 >seq243 Length=18593 Score = 540 bits (598), Expect = 3e-149 Identities = 697/954 (73%), Gaps = 6/954 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||| | |||||||| |||||||| || ||||| || | | |||| || Sbjct 3819 AACCGCTTATATGTTGGTTGGTTTGGTGTTCTTATGATCCCTACATTATTAACAGCAACT 3760 Query 28720 ATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 | ||| || ||||| || || || || || || ||||| || |||||||| || ||||| Sbjct 3759 A-CTGTTTTTATTATCGCTTTTATCGCTGCTCCGCCAGTAGATATTGATGGTATTCGCGA 3701 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 ||| || | || | || |||||||| ||||| || || || || || ||||| | Sbjct 3700 ACCAGTATCAGGTTCATTACTATATGGAAATAACATAATTTCTGGCGCTGTAGTACCAAC 3641 Query 28839 CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATG 28898 || || || || |||| || |||||||| ||||||||| ||| ||||| ||||| Sbjct 3640 TTCAAACGCAATTGGTTTACATTTTTACCCAATCTGGGAAGCTGCTTCTCTTGACGAATG 3581 Query 28899 GCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGC 28958 | | || || || ||||| | ||||||| | || | ||||| || | || | | | | Sbjct 3580 GTTATATAATGGTGGACCTTACCAACTTATCGTATGTCACTTTTTCTTAGGAATTTGTTC 3521 Query 28959 TTACATGGGACGCGAGTGGGAACTTAGCTATC-GACTAGGAATGAGGCCGTGGATTTGTG 29017 |||||||| || || |||||| ||| || || | |||| ||| | |||||||| | Sbjct 3520 ATACATGGGTCGTGAATGGGAA-TTATCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAG 3462 Query 29018 TCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTC 29077 | || || ||||| || || || || || |||| || ||| | | || ||| | || | Sbjct 3461 TTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCTGTATTCATTATTTATCCAATTGGAC 3402 Query 29078 AAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGG 29137 ||||||| || || | ||||| || |||||||| || || ||||| | ||| | | Sbjct 3401 AAGGTTCATTCTCTGATGGTATGCCATTAGGTATTTCTGGTACTTTCAATTTTATGATCG 3342 Query 29138 TGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAG 29197 | |||||||| |||||||||||| | |||||||| ||||| ||||| || |||||||| | Sbjct 3341 TATTCCAAGCAGAACATAACATTTTAATGCACCCATTCCATATGCTTGGTGTTGCTGGTG 3282 Query 29198 TGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC 29257 | || ||||| || ||||| ||||||||| ||||| | || || || || | | | Sbjct 3281 TATTTGGTGGTTCATTATTTTCTGCAATGCATGGTTCATTAGTAACTTCTTCTTTAATTC 3222 Query 29258 GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGA 29317 |||| || |||||| || ||| ||| ||||||||| || |||||| ||||||| | Sbjct 3221 GTGAAACAACTGAAAACGAATCTGCTAACGTTGGTTACAAATTCGGACAACAAGAAGAAA 3162 Query 29318 CTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTT 29377 |||| ||||||||||| ||||| || || || || ||||| || |||||||| || |||| Sbjct 3161 CTTACAACATCGTAGCTGCTCATGGATATTTCGGTCGTTTAATTTTCCAATACGCATCTT 3102 Query 29378 TCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGT 29437 | ||||| |||||| ||||||||||| | ||||| ||||| || || || ||||||| Sbjct 3101 TTAATAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGT 3042 Query 29438 TCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGT 29497 | |||| || || |||| || ||||| ||||| | || ||||| ||||||||||| | Sbjct 3041 TTACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAATGGTTTCAACTTTAACCAAT 2982 Query 29498 CGCTTCTCGA-CAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCT 29556 | | | || |||| |||||||| ||||| |||||||||||| || | || || ||| Sbjct 2981 CAGTAGTTGATTCACAA-GGTCGTGTTATTAACACTTGGGCTGATATTATTAACCGTGCT 2923 Query 29557 AACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGAT 29610 || || || | ||||| |||||||| |||||||| || || |||||||| ||| Sbjct 2922 AATCTTGGTATGGAAGTTATGCATGAACGTAATGCACACAATTTCCCACTAGAT 2869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146664948621404