Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq243 603 3e-168 >seq243 Length=18593 Score = 603 bits (668), Expect = 3e-168 Identities = 736/996 (74%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 18714 TTGGGACTC-TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGT 18772 ||||| ||| ||||||||| |||||||| || || || ||||| | ||| | || |||| Sbjct 3856 TTGGG-CTCGTTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGT 3798 Query 18773 TTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCA 18832 |||| || ||||| || | | |||| |||| | ||| ||||| || || | Sbjct 3797 TTGGTGTTCTTATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTA 3738 Query 18833 TTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTT 18892 | ||||| || || ||||| |||||||| || ||||| || || |||| | || | Sbjct 3737 TCGCTGCTCCGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTAT 3678 Query 18893 ATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACT 18952 ||||||| ||||| || || || || || || || | || || || || |||| | Sbjct 3677 ATGGAAATAACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATT 3618 Query 18953 TCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCC 19012 | |||||||| ||||||||| ||| ||||| |||||| | || || || ||||| | || Sbjct 3617 TTTACCCAATCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACC 3558 Query 19013 AACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAAC 19072 ||||| | || | ||||| || | || | | | | |||||||| || || |||||| Sbjct 3557 AACTTATCGTATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAA- 3499 Query 19073 TTAGCTATC-GACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCC 19131 ||| || || | |||| ||||| || ||||| ||||| || ||||| |||||||| Sbjct 3498 TTATCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCT 3439 Query 19132 GCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATG 19191 ||||| |||| || ||| || | |||||| |||| |||||||| || || | |||| Sbjct 3438 GCAGCTACTGCTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATG 3379 Query 19192 CCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATC 19251 || || |||||| |||||| ||||| | ||| | |||||||| || ||||||||||| Sbjct 3378 CCATTAGGTATTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATT 3319 Query 19252 CTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGT 19311 | |||||||| ||||| ||||| ||||| |||||||| || || || ||| ||||| | Sbjct 3318 TTAATGCACCCATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCT 3259 Query 19312 GCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCT 19371 || ||||| ||||| | || || || || | | |||||||| |||||| | | |||| Sbjct 3258 GCAATGCATGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCT 3199 Query 19372 CAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCAT 19431 ||| ||| ||||| || || ||| ||||||| ||||| ||||| || ||||||||| Sbjct 3198 GCTAACGTTGGTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCAT 3139 Query 19432 GGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACAT 19491 || ||||| ||||| | |||||||| |||||||| || || || |||||| |||| Sbjct 3138 GGATATTTCGGTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACAC 3079 Query 19492 TTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACC 19551 ||||| || ||||||||||| || ||||| ||||||||| | || | || | || Sbjct 3078 TTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACT 3019 Query 19552 ATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACA-ACAATGGTCG 19610 |||||||| ||||| ||||| || ||||||||||| || | |||| |||| ||||| Sbjct 3018 ATGGCATTTAACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAA-GGTCG 2960 Query 19611 TGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCA 19670 ||| ||| | ||||||||||| ||| | || |||||||| || || | || || ||||| Sbjct 2959 TGTTATTAACACTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCA 2900 Query 19671 CGAACGTAATGCTCATAACTTCCCACTTGATTTGGC 19706 ||||||||||| || || |||||||| ||||| || Sbjct 2899 TGAACGTAATGCACACAATTTCCCACTAGATTTAGC 2864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141148173122892