Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq243 603 3e-168
>seq243
Length=18593
Score = 603 bits (668), Expect = 3e-168
Identities = 736/996 (74%), Gaps = 6/996 (1%)
Strand=Plus/Minus
Query 18714 TTGGGACTC-TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGT 18772
||||| ||| ||||||||| |||||||| || || || ||||| | ||| | || ||||
Sbjct 3856 TTGGG-CTCGTTTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGT 3798
Query 18773 TTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCA 18832
|||| || ||||| || | | |||| |||| | ||| ||||| || || |
Sbjct 3797 TTGGTGTTCTTATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTA 3738
Query 18833 TTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTT 18892
| ||||| || || ||||| |||||||| || ||||| || || |||| | || |
Sbjct 3737 TCGCTGCTCCGCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTAT 3678
Query 18893 ATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACT 18952
||||||| ||||| || || || || || || || | || || || || |||| |
Sbjct 3677 ATGGAAATAACATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATT 3618
Query 18953 TCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCC 19012
| |||||||| ||||||||| ||| ||||| |||||| | || || || ||||| | ||
Sbjct 3617 TTTACCCAATCTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACC 3558
Query 19013 AACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAAC 19072
||||| | || | ||||| || | || | | | | |||||||| || || ||||||
Sbjct 3557 AACTTATCGTATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAA- 3499
Query 19073 TTAGCTATC-GACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCC 19131
||| || || | |||| ||||| || ||||| ||||| || ||||| ||||||||
Sbjct 3498 TTATCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCT 3439
Query 19132 GCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATG 19191
||||| |||| || ||| || | |||||| |||| |||||||| || || | ||||
Sbjct 3438 GCAGCTACTGCTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATG 3379
Query 19192 CCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATC 19251
|| || |||||| |||||| ||||| | ||| | |||||||| || |||||||||||
Sbjct 3378 CCATTAGGTATTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATT 3319
Query 19252 CTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGT 19311
| |||||||| ||||| ||||| ||||| |||||||| || || || ||| ||||| |
Sbjct 3318 TTAATGCACCCATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCT 3259
Query 19312 GCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCT 19371
|| ||||| ||||| | || || || || | | |||||||| |||||| | | ||||
Sbjct 3258 GCAATGCATGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCT 3199
Query 19372 CAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCAT 19431
||| ||| ||||| || || ||| ||||||| ||||| ||||| || |||||||||
Sbjct 3198 GCTAACGTTGGTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCAT 3139
Query 19432 GGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACAT 19491
|| ||||| ||||| | |||||||| |||||||| || || || |||||| ||||
Sbjct 3138 GGATATTTCGGTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACAC 3079
Query 19492 TTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACC 19551
||||| || ||||||||||| || ||||| ||||||||| | || | || | ||
Sbjct 3078 TTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACT 3019
Query 19552 ATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACA-ACAATGGTCG 19610
|||||||| ||||| ||||| || ||||||||||| || | |||| |||| |||||
Sbjct 3018 ATGGCATTTAACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAA-GGTCG 2960
Query 19611 TGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCA 19670
||| ||| | ||||||||||| ||| | || |||||||| || || | || || |||||
Sbjct 2959 TGTTATTAACACTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCA 2900
Query 19671 CGAACGTAATGCTCATAACTTCCCACTTGATTTGGC 19706
||||||||||| || || |||||||| ||||| ||
Sbjct 2899 TGAACGTAATGCACACAATTTCCCACTAGATTTAGC 2864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 141148173122892
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |