Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq43 113 4e-20 seq133 104 2e-17 >seq43 Length=247289 Score = 113 bits (124), Expect = 4e-20 Identities = 176/251 (70%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCCGCC-- 147941 |||||||||| |||||||| || | ||| | ||| | || || || ||||| ||||| Sbjct 177500 AGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGCCGCCTC 177559 Query 147942 -CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 |||||| || | |||| | ||| ||| || ||||||| |||||| | | |||| | Sbjct 177560 CCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGC 177619 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 | |||||||||| ||| | | || ||| || | | ||||| | | | || Sbjct 177620 TGGAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATGCTCAGGC 177679 Query 148061 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGT 148120 | |||||||| || |||| || ||||| ||||| || || || ||||||||| | Sbjct 177680 CGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGATGCCCT 177739 Query 148121 CGATGCTGTCG 148131 ||||||||||| Sbjct 177740 CGATGCTGTCG 177750 >seq133 Length=726431 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| |||| || | | | ||||| || || |||||||||||| || ||| Sbjct 170697 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 170756 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || |||||||| || |||| | |||| || ||||| || || ||||| ||||| Sbjct 170757 CGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCC 170816 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || |||| | || | || |||| | ||||||||||| | Sbjct 170817 TCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCACTTCGAGC 170876 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| || || | ||| ||||||||| Sbjct 170877 GTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 170918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608971842640