Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq43 113 4e-20
seq133 104 2e-17
>seq43
Length=247289
Score = 113 bits (124), Expect = 4e-20
Identities = 176/251 (70%), Gaps = 3/251 (1%)
Strand=Plus/Plus
Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCCGCC-- 147941
|||||||||| |||||||| || | ||| | ||| | || || || ||||| |||||
Sbjct 177500 AGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGCCGCCTC 177559
Query 147942 -CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000
|||||| || | |||| | ||| ||| || ||||||| |||||| | | |||| |
Sbjct 177560 CCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGC 177619
Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060
| |||||||||| ||| | | || ||| || | | ||||| | | | ||
Sbjct 177620 TGGAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATGCTCAGGC 177679
Query 148061 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGT 148120
| |||||||| || |||| || ||||| ||||| || || || ||||||||| |
Sbjct 177680 CGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGATGCCCT 177739
Query 148121 CGATGCTGTCG 148131
|||||||||||
Sbjct 177740 CGATGCTGTCG 177750
>seq133
Length=726431
Score = 104 bits (114), Expect = 2e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| ||||| |||| || | | | ||||| || || |||||||||||| || |||
Sbjct 170697 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 170756
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| || |||||||| || |||| | |||| || ||||| || || ||||| |||||
Sbjct 170757 CGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCC 170816
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || || || |||| | || | || |||| | ||||||||||| |
Sbjct 170817 TCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCACTTCGAGC 170876
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | || || || ||||| || || | ||| |||||||||
Sbjct 170877 GTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 170918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476608971842640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |