Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq133 109 6e-19 >seq133 Length=726431 Score = 109 bits (120), Expect = 6e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 146994 CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAG 147053 ||| || |||| |||| ||||||| || | |||| || ||||||||||| |||||||| Sbjct 21991 CACCTGCGCCAGCATGCAGGTGAGGAGGGCGTAGGATGCGATGTTGAAGGGCACCCCCAG 22050 Query 147054 GCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAA 147113 ||| | ||| | || | |||||||| ||||||||| ||||| ||||| |||||| | || Sbjct 22051 GCCGAGGTCGGCGGAGCGCTGGTACATCTGGCACGACAGCTCGCCGTCTGCCACGAAGAA 22110 Query 147114 CTG 147116 ||| Sbjct 22111 CTG 22113 Score = 82.4 bits (90), Expect = 9e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || |||||||| | |||||||||||||||||| || ||||||||||| || | ||| Sbjct 23528 GCGCCAAAGTGGCGCCACTGGAAGCCGTACACCGGACCCAGGTCGCCCTCCTCGCGGTGT 23587 Query 147343 GAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 | ||| ||| || | || |||||| | ||||||| | ||||||||||| ||| || Sbjct 23588 CCCAGGCCGCGCGCG-TCCAGGAACTCGCGCGACCCGTTGCCGTCCCAGATGTGCACGCC 23646 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTC 147458 | ||| ||| | || || | ||| || ||||||||||||||||| Sbjct 23647 GCGGTCGGCCAGCAGGCGCGCGTTGGTCGCGCCGGAGACAAACCAGAGCAGCTCCTC 23703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583485272193600