Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq133 141 9e-29 seq43 113 5e-20 seq149 82.4 8e-11 >seq133 Length=726431 Score = 141 bits (156), Expect = 9e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || ||||| ||||| || |||||||||||| | |||| | Sbjct 170700 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 170759 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| ||||| |||| |||||||| ||||| || ||||| || Sbjct 170760 CCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCC 170819 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || ||| | |||||||| || ||||| ||||| ||| Sbjct 170820 TTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCACTTCGAGCGTA 170879 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || ||||| || ||||| Sbjct 170880 ATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || ||||| ||||| || |||||||||||| | |||| | Sbjct 170928 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 170987 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| ||||| |||| ||||| || || || || ||||| || Sbjct 170988 CCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCC 171047 Query 134616 TTTTCTTGAATTTT 134629 || || || || || Sbjct 171048 TTGTCCTGGATCTT 171061 >seq43 Length=247289 Score = 113 bits (124), Expect = 5e-20 Identities = 225/333 (68%), Gaps = 3/333 (1%) Strand=Plus/Minus Query 7653 GTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTC 7712 ||| || ||||| |||||||| |||| ||| ||||| | || || ||||||| Sbjct 177834 GTTCACTCACGCCTCGCCCACGCTGTTCAACGCCGGCACCCCCCGCCCCCAGCTGTCCTC 177775 Query 7713 GTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA 7772 || || | | ||||| | ||||||||||| ||||| ||| |||||||| || Sbjct 177774 CTGCTTCCTAGTGTCCATGAAGGCCGACAGCATCGAGGGCATCTACGACACGCTGAAGGA 177715 Query 7773 TTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGC 7832 ||||| || || || | || ||||| || || |||| | | || || | || || Sbjct 177714 GTGCGCGGCCATCTCTAAGTCCGCGGGCGGCATCGGCCTGAGCATGCACAACATCCGTGC 177655 Query 7833 CAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCG 7892 || || | |||| ||||||||| || ||| | | ||||||| |||| Sbjct 177654 CACGGGGTCCTACATCCGCGGCACCAACGGCTCCAGCAACGGCATCGTGCCCATGCTGCG 177595 Query 7893 CGTGTTCAATAACGCGGTGCGACATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGC 7949 ||| ||||| || | | ||| | || |||||| || || |||||||| |||||| Sbjct 177594 CGTCTTCAACGACACCGCGCGCTACGTGGACCAGGGAGGCGGCAAGCGCAAGGGCGCCTT 177535 Query 7950 TGCCATCTATTTGGAGCCGTGGCACGCGGACAT 7982 |||||| || | ||||| ||||| || ||||| Sbjct 177534 TGCCATGTACCTCGAGCCCTGGCATGCCGACAT 177502 >seq149 Length=203194 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || |||| || ||||| || ||||| ||||| || |||||||||||| Sbjct 6847 TTCCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 6906 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || || ||||| ||||| ||||| |||| ||||| || || || | Sbjct 6907 ACAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGGG 6966 Query 134605 GTATGCCTTCTTTTTCTTGAATTTT 134629 | || || || || || ||||| || Sbjct 6967 GGATTCCCTCCTTATCCTGAATCTT 6991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396037262480