Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq133 141 9e-29
seq43 113 5e-20
seq149 82.4 8e-11
>seq133
Length=726431
Score = 141 bits (156), Expect = 9e-29
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| ||| ||||| || ||||| ||||| || |||||||||||| | |||| |
Sbjct 170700 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 170759
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| |||||||| ||||| ||||| |||| |||||||| ||||| || ||||| ||
Sbjct 170760 CCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCC 170819
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || || || ||| | |||||||| || ||||| ||||| |||
Sbjct 170820 TTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCACTTCGAGCGTA 170879
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || || || | || || ||||| || |||||
Sbjct 170880 ATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| ||| ||||| || ||||| ||||| || |||||||||||| | |||| |
Sbjct 170928 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 170987
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| |||||||| ||||| ||||| |||| ||||| || || || || ||||| ||
Sbjct 170988 CCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCC 171047
Query 134616 TTTTCTTGAATTTT 134629
|| || || || ||
Sbjct 171048 TTGTCCTGGATCTT 171061
>seq43
Length=247289
Score = 113 bits (124), Expect = 5e-20
Identities = 225/333 (68%), Gaps = 3/333 (1%)
Strand=Plus/Minus
Query 7653 GTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTC 7712
||| || ||||| |||||||| |||| ||| ||||| | || || |||||||
Sbjct 177834 GTTCACTCACGCCTCGCCCACGCTGTTCAACGCCGGCACCCCCCGCCCCCAGCTGTCCTC 177775
Query 7713 GTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA 7772
|| || | | ||||| | ||||||||||| ||||| ||| |||||||| ||
Sbjct 177774 CTGCTTCCTAGTGTCCATGAAGGCCGACAGCATCGAGGGCATCTACGACACGCTGAAGGA 177715
Query 7773 TTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGC 7832
||||| || || || | || ||||| || || |||| | | || || | || ||
Sbjct 177714 GTGCGCGGCCATCTCTAAGTCCGCGGGCGGCATCGGCCTGAGCATGCACAACATCCGTGC 177655
Query 7833 CAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCG 7892
|| || | |||| ||||||||| || ||| | | ||||||| ||||
Sbjct 177654 CACGGGGTCCTACATCCGCGGCACCAACGGCTCCAGCAACGGCATCGTGCCCATGCTGCG 177595
Query 7893 CGTGTTCAATAACGCGGTGCGACATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGC 7949
||| ||||| || | | ||| | || |||||| || || |||||||| ||||||
Sbjct 177594 CGTCTTCAACGACACCGCGCGCTACGTGGACCAGGGAGGCGGCAAGCGCAAGGGCGCCTT 177535
Query 7950 TGCCATCTATTTGGAGCCGTGGCACGCGGACAT 7982
|||||| || | ||||| ||||| || |||||
Sbjct 177534 TGCCATGTACCTCGAGCCCTGGCATGCCGACAT 177502
>seq149
Length=203194
Score = 82.4 bits (90), Expect = 8e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
|||| || | || |||| || ||||| || ||||| ||||| || ||||||||||||
Sbjct 6847 TTCCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 6906
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
| |||| | || || ||||| ||||| ||||| |||| ||||| || || || |
Sbjct 6907 ACAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGGG 6966
Query 134605 GTATGCCTTCTTTTTCTTGAATTTT 134629
| || || || || || ||||| ||
Sbjct 6967 GGATTCCCTCCTTATCCTGAATCTT 6991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505396037262480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |