Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_026923.1
Length=179110
Score E
Sequences producing significant alignments: (Bits) Value
seq243 744 0.0
seq260 583 1e-161
>seq243
Length=18593
Score = 744 bits (824), Expect = 0.0
Identities = 754/979 (77%), Gaps = 2/979 (0%)
Strand=Plus/Minus
Query 157676 TTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTG 157735
|| || ||||||||||| || | ||||| || |||||||||||||| ||||| ||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 157736 ATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTC-ATCGTCGCCTTCGTCGCTGCTCC 157794
||||| ||||| || | | ||||||| |||||| || |||| || ||||||||||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728
Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854
|| || || ||||| || || ||||||||||| | |||||| | | ||||| || ||
Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668
Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914
||| || ||||| || || || || | |||||||||||| ||| | || || ||||| ||
Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608
Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974
||||||||| || ||||||||||| ||| | ||||| ||||| |||| ||||||| | ||
Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548
Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034
|| ||||| | | || || | | | || ||||| ||||| |||||| | |||| |||
Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488
Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094
|||||||||||| || |||||| || || ||||| || || || |||||||| | |||
Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428
Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154
|||||| | | ||||| | || |||||||| ||||| |||| |||||| | |||||
Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368
Query 158155 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158214
||||||||||| || | ||| | ||||||||||||||||| ||||| | ||||||||
Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308
Query 158215 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274
||||||||||| ||||||||||| ||||| ||||| || | || ||||| ||||||||
Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248
Query 158275 AAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACGG 158334
| || ||||| || | |||||||||| ||||||| || || ||| ||
Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188
Query 158335 TTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGG 158394
||| || ||||| ||| ||||||| || ||||||||||| || || ||||| || |||||
Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128
Query 158395 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 158454
|||||| || ||||||||||| || || || ||||| ||||| || ||||||||| | ||
Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068
Query 158455 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAA 158514
||| ||||| ||||| || || ||||| || || | || | ||||| |||||||| ||
Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008
Query 158515 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 158574
| | || ||||||||||| ||||| || | ||||| || |||||||| | |||||
Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948
Query 158575 CTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158634
||||| ||| | | ||||| ||| |||||||||||||||||||||||| ||||| ||
Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888
Query 158635 ACACAACTTCCCACTGGAT 158653
|||||| |||||||| |||
Sbjct 2887 ACACAATTTCCCACTAGAT 2869
>seq260
Length=66046
Score = 583 bits (646), Expect = 1e-161
Identities = 745/1021 (73%), Gaps = 4/1021 (0%)
Strand=Plus/Minus
Query 159373 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGG 159432
|| ||||||||| || | |||||||||||| || ||||| ||||| ||| | || |||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 159433 TCTGGACTCCTACTTCTTCCC-ACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCAC 159491
|| || || || || ||||| ||||| ||| | || | || |||||| | ||||| ||
Sbjct 57597 TCAGGTCTATTA-TTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539
Query 159492 GACTTTTATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAA 159551
|| ||| | | |||||| || || || | |||| ||| || | || ||| ||
Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479
Query 159552 TTTTCTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACT 159611
||| | || | ||||| || || || ||| || |||||| |||||| || || | |
Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTT 57420
Query 159612 T-TGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGT 159670
| |||||||| || ||||||| || || || ||||||||||||||||| |||||
Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360
Query 159671 CCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAA 159730
| |||||||| || |||||||| || || | || || |||||||| || ||||| ||||
Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300
Query 159731 TTGCTCGTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 159790
| || ||| |||| || || || || || || ||||| || |||| |||||||| |
Sbjct 57299 TCGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAG 57240
Query 159791 TTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTA 159850
||||||| ||||| | || || ||| | ||||| ||| ||||| |||||||| |
Sbjct 57239 TTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGA 57180
Query 159851 GTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGA 159910
|||| || || ||||| || || | || | || ||| | || ||||||||||||||||
Sbjct 57179 GTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGA 57120
Query 159911 CCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTG 159970
| | || || || ||||||||||| ||||||||| | ||||| | || || | ||||
Sbjct 57119 CTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTG 57060
Query 159971 CAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACAT 160030
|||| ||||| || || ||||| || || | ||||||||||| || ||||||||||
Sbjct 57059 CAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACAT 57000
Query 160031 TTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCT 160090
|| |||||| | || ||||||| |||||| ||||||||| | || || ||||| ||||
Sbjct 56999 TTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCT 56940
Query 160091 TCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGT 160150
| ||||| || || |||||||| || |||||||| || || ||| | ||||| || ||||
Sbjct 56939 TTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 56880
Query 160151 TGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCA 160210
| ||||| || || | ||| ||||||| || |||| | | || | || || |
Sbjct 56879 TATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAA 56820
Query 160211 ACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTG 160270
| | ||||| | ||||||||| || || ||| | || || ||||| || |||||||
Sbjct 56819 ATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTG 56760
Query 160271 AGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTG 160330
| || || || || || || || || ||||||||||| |||||||||||||||| ||
Sbjct 56759 AAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTC 56700
Query 160331 CTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCAC 160390
||||| || |||||||| || | ||||| ||||| || |||| | || ||||| |
Sbjct 56699 AAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTC 56640
Query 160391 T 160391
|
Sbjct 56639 T 56639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 573021321112800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |